User: FT

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FT0
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France
Last seen:
1 year, 9 months ago
Joined:
2 years, 5 months ago
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f*****************@gmail.com

Posts by FT

<prev • 11 results • page 1 of 2 • next >
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Answer: A: Galaxy - SGE, job terminated but failed
... Hi Daniel, In our case, as I recall, it came from our SGE default setting. It merged the error and output streams into a single file. But Galaxy expects two files. I added the "-j" option to the job_conf.xml file (where you can set the same arguments as in a qsub command). And it worked ;) F.T ...
written 21 months ago by FT0
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Apache - NIS - Galaxy config
... Hi, I would like to configure my Apache web server for authentication Galaxy with a NIS server. I did not find sufficiently complete and simple documentation to me (Apache is absolutely out of my perimeter skills). How to choose the most appropriate Apache module (pal , ldap , ...? ). I tried to ...
authentication nis external apache written 2.2 years ago by FT0
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Comment: C: Job Output Not Returned From Cluster
... Hi, I hope you still follow the Galaxy Biostar forum (fingers crossed). I get the same error but no answer to my question since it is a very specific subject. Do you remember what was the issue in your sge configuration ? F.T ...
written 2.2 years ago by FT0
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Answer: A: Galaxy - SGE, job terminated but failed
... Hi, I come back to this post with some news. I fixed one of my issues : it turns out to be that one of the nodes of my cluster did'nt share the directory where I store the data. That's why sometimes I got a job that worked with success and sometimes I didn't. It depended on the node where the proc ...
written 2.2 years ago by FT0
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Galaxy - SGE, job terminated but failed
... Hi everyone, I come back to you with another problem  : I tried to set Galaxy to our cluster. I used this job_conf.xml :   <?xml version="1.0"?> <job_conf>         <plugins workers="5">                 <plugin id="sge" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRu ...
cluster galaxy sge written 2.3 years ago by FT0
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Answer: A: user authentication (NIS)
... Thanks for the answer ! Sorry for the cross-post. I thought it might not be the best place for my question since biostar is more on the user side ;) In fact, the proposed access restrictions for the librairies construction will not be enough for me. My problem is that the account used to install t ...
written 2.3 years ago by FT0
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user authentication (NIS)
... Hi, I read the doc about external authentication but I'm not sure to understand all of it (I'm a newbie). I would like to use both capacities of NIS :  - the use of Linux login and password for access to Galaxy  - and exploit the system user accounts to the restricted access on file/directory.Im ...
authentication nis system user accounts user written 2.3 years ago by FT0
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Answer: A: how to manage tool versions in a local instance ?
... Hi, thanks for the answer ! I searched the option to change the tools version (on usegalaxy.org), but I saw it only on the tool shed available from "Analyze Data" . I could change the version but only if I run the tool alone. I was not able to update a tool in a workflow. Is it possible ? Because w ...
written 2.4 years ago by FT0
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how to manage tool versions in a local instance ?
... Hi, I read the doc about tools integration but I would like to know if there are other ways than docker to manage all the versions of a tool and its dependencies in a local instance of Galaxy ? Perhaps a way to create a workflow by selecting a tool and specifying the version in the settings ? Some ...
local versions tool written 2.4 years ago by FT0
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Comment: C: Problems with login into Galaxy (local instance)
... Thank you for your answer! I use Firefox and I regularly clean the browser cache (since I tested the tutorial on integrating perl script in the tool shed : the new tool did not appear in the left panel when it seemed to be recognized while charging Galaxy). I can try with another browser (not chro ...
written 2.4 years ago by FT0

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