User: qspencer

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qspencer0
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2 years, 4 months ago
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Posts by qspencer

<prev • 9 results • page 1 of 1 • next >
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Answer: A: Problems Getting Galaxy AMI to Run
... I believe it was via a Google search. It would be great if you could just remove any outdated information. Thanks for the link to the current Getting Started page! Quentin Spencer ...
written 2.4 years ago by qspencer0
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Answer: A: Problems Getting Galaxy AMI to Run
... No, as noted in my original post I followed the instructions here: [https://wiki.galaxyproject.org/CloudMan/AWS/GettingStarted][1] [1]: https://wiki.galaxyproject.org/CloudMan/AWS/GettingStarted ...
written 2.4 years ago by qspencer0
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Problems Getting Galaxy AMI to Run
... Following the instructions at https://wiki.galaxyproject.org/CloudMan/AWS/GettingStarted I can't get the referenced ami: AMI: ami-b45e59de Name: Galaxy-CloudMan-1457720469 (active dates: 2016-03-24 -> present) to run. There seem to be multiple start-up errors. I'm seeing errors with Pos ...
ami written 2.4 years ago by qspencer0
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Errors Trying to Fetch Reference Genome
... I am running Galaxy in AWS. I followed the instructions [here][1] to install it. I am trying to fetch a reference genome that I copied to the system Galaxy is running on. It says "fetching" next to "Reference Genome" on the admin page for "Local data" but it never seems to finish. When I looked at t ...
software error written 2.4 years ago by qspencer0 • updated 2.4 years ago by Jennifer Hillman Jackson25k
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How to Edit a Shared Workflow
... Another Galaxy user shared a workflow with me using the "share with another user" option so that we could both work on it at the same time and get each other's changes. But when I click the menu next to the workflow the "edit" option is not displayed. Is this by design? If so, how can two people wor ...
workflow written 2.5 years ago by qspencer0 • updated 2.5 years ago by Jennifer Hillman Jackson25k
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Answer: A: Accessing S3 Buckets from Galaxy
... Thank you for your reply. I edited the file "persistent_data.yaml" in Galaxy's default bucket and added the user data field "bucket_default" in the following format: bucket_default: <my bucket name> I then restarted the cluster via the admin page but still get "access denied" when I try to l ...
written 3.2 years ago by qspencer0
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Accessing S3 Buckets from Galaxy
... I'm trying to access a folder containing fastq files that's located in an S3 bucket from Galaxy. I click on the "load your own data" link on the right and then the "Paste/Fetch data" button. I paste in my S3 url and hit the "Start" button. I end up with some HTML that contains an "Access Denied" mes ...
aws s3 written 3.3 years ago by qspencer0
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Answer: A: Problem retrieving key pair using CloudMan to install Galaxy in Amazon EC2
... Thank you for the response. To install Galaxy on AWS I was going to http://cloudman.irb.hr/ and then clicking on the "Create a Cluster" link which took me to https://biocloudcentral.herokuapp.com/launch. I filled out that form and then clicked the "Create a Cluster" button.   I will try again with ...
written 3.3 years ago by qspencer0
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Problem retrieving key pair using CloudMan to install Galaxy in Amazon EC2
... I'm trying to use Cloudman to install Galaxy on Amazon EC2. I need to have a key pair associated with the AMI so that I can SSH in to it. If I use the Cloudman defaults I am not prompted to download the private key. If I use an existing key then the install fails. I don't get an error message; the p ...
cloudman written 3.3 years ago by qspencer0

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