User: Brenna

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Brenna0
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2 years, 12 months ago
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3 years ago
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Posts by Brenna

<prev • 7 results • page 1 of 1 • next >
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Trackster Not Showing Visulization
... Hello, I am trying to use trackster to compare samples against a reference genome. I have uploaded all of the .bam files (accepted hits) from tophat for each of the samples as well as the reference genome. When I go to look though only the genome is displaying anything. The samples do not show anyt ...
local trackster written 3.0 years ago by Brenna0
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Duplicate Row Removal in Merged FeatureCounts
... Hello,   I am trying to transfer merged featurecount data into an R-studio package called RNASeqGUI. When I attempt to use one of its programs I get the error: duplicate 'row.names' are not allowed   My questions is is there a way that I can remove duplicated rows from a merged file without havi ...
duplicate galaxy rnaseq rnaseqgui 'row.names' written 3.0 years ago by Brenna0
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Comment: C: Trying to get URL from Tophat output for IGV
... When I tried to add the URL that way into the add track option of IGV it would not work correctly. Instead it added a column at the top with a lot of nonsense symbols. ...
written 3.0 years ago by Brenna0
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Trying to get URL from Tophat output for IGV
... Hello!   I am trying to visualize multiple sample's tophat outputs in IGV.  I would like to be able to upload the files using the URL option in IGV, but I am not sure how to get the tophat run data in a URL form. Do I need to do a file conversion or is there any easier way?    Thanks! Brenna ...
url igv tophat written 3.0 years ago by Brenna0 • updated 3.0 years ago by Jennifer Hillman Jackson25k
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Comment: C: Need to Expand Visualization
... I think I figured it out. It likes the BAM files! Thank you so much for your help today!   ...
written 3.0 years ago by Brenna0
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Comment: C: Need to Expand Visualization
... Hello,   I have gone in and tried each of the different display settings as you suggest, but it still stays all squished up at the top. I will look through the publication and hopefully find some more help. Thank you so much for you advice! ...
written 3.0 years ago by Brenna0
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Need to Expand Visualization
... Hello,  I recently used tophat2 to align two reads to the rn4 genome. I went through trackster and added my tracks to try and visualize the results, but when the screen loads the map of the reads is only at the very very top and it can not be seen. Is there anyway to expand this section as to see ...
trouble shooting visualization rna-seq written 3.0 years ago by Brenna0 • updated 3.0 years ago by Jennifer Hillman Jackson25k

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