User: nhs
nhs • 0
- Reputation:
- 0
- Status:
- New User
- Location:
- European Union
- Last seen:
- 10 months, 4 weeks ago
- Joined:
- 3 years, 4 months ago
- Email:
- n**@clin.au.dk
Posts by nhs
<prev
• 5 results •
page 1 of 1 •
next >
0
votes
2
answers
612
views
2
answers
... Hi Jen
Works, thanks a billion
/NHS ...
written 2.4 years ago by
nhs • 0
0
votes
2
answers
612
views
2
answers
... Hi
I have reached my disk quota prematurely at <150 GB, could you please advise on how to resolve or correct for me.
Thanks a bunch
/NHS ...
written 2.4 years ago by
nhs • 0
1
vote
1
answer
817
views
1
answer
... Hi
Running plotCoverage (Deeptools) on a single (or multiple) filtered BAM file(s) returns a completed job with the following error message:
empty
format png database hg38
The number of labels does not match the number of BAM files.
what does labels cover in this context? and how can these be cha ...
written 2.4 years ago by
nhs • 0
• updated
2.4 years ago by
Jennifer Hillman Jackson ♦ 25k
0
votes
0
answers
404
views
0
answers
... Hi
After applying FixMate and filtering on "isMapped" and "isMatemapped" (and quality and no duplicates) I still have a considerable amount of reads flagged as Mate_Not_Found when running ValidateSam. Mapping to different chromosomes seems not to be the issue judged by Flagstat.
How can I get rid o ...
written 2.5 years ago by
nhs • 0
• updated
2.5 years ago by
Jennifer Hillman Jackson ♦ 25k
0
votes
1
answer
723
views
1
answer
... Hi
After the update the Picard tool "ValidateSamFile" in the summary output mode returned the following error (verbose works fine).Do I need to adjust any settings?
Thanks..
236 ValidateSamFile on data 232: BAM validation summary
empty
formattxtdatabasehg38
Warning: Exit code 1 () Picked up _JAVA ...
written 2.5 years ago by
nhs • 0
• updated
2.5 years ago by
Jennifer Hillman Jackson ♦ 25k
Latest awards to nhs
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 16.09
Traffic: 137 users visited in the last hour