User: nhs

nhs • 0

Reputation:: 0
Status:: New User
Location:: European Union
Last seen:: 5 months ago
Joined:: 2 years, 10 months ago
Email:: n**@clin.au.dk

Posts by nhs

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Answer: A: Disk quota reached 100% at <150GB

... Hi Jen Works, thanks a billion /NHS ...

written 23 months ago by nhs • 0

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467

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Disk quota reached 100% at <150GB

... Hi I have reached my disk quota prematurely at <150 GB, could you please advise on how to resolve or correct for me. Thanks a bunch /NHS ...

disk quota software error written 23 months ago by nhs • 0

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Error message: "The number of labels does not match the number of BAM files", when running bamCoverage

... Hi Running plotCoverage (Deeptools) on a single (or multiple) filtered BAM file(s) returns a completed job with the following error message: empty format png database hg38 The number of labels does not match the number of BAM files. what does labels cover in this context? and how can these be cha ...

bam labels deeptools software error written 23 months ago by nhs • 0 • updated 23 months ago by Jennifer Hillman Jackson ♦ 24k

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Mate_Not_Found after FixMate and filter

... Hi After applying FixMate and filtering on "isMapped" and "isMatemapped" (and quality and no duplicates) I still have a considerable amount of reads flagged as Mate_Not_Found when running ValidateSam. Mapping to different chromosomes seems not to be the issue judged by Flagstat. How can I get rid o ...

bam samtools medip-seq written 24 months ago by nhs • 0 • updated 24 months ago by Jennifer Hillman Jackson ♦ 24k

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Error message when using the ValidateSamFile tool (Picard) in summary mode

... Hi After the update the Picard tool "ValidateSamFile" in the summary output mode returned the following error (verbose works fine).Do I need to adjust any settings? Thanks.. 236 ValidateSamFile on data 232: BAM validation summary empty formattxtdatabasehg38 Warning: Exit code 1 () Picked up _JAVA ...

bam galaxy software error written 2.0 years ago by nhs • 0 • updated 24 months ago by Jennifer Hillman Jackson ♦ 24k

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