User: nhs
nhs • 0
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- Location:
- European Union
- Last seen:
- 5 months ago
- Joined:
- 2 years, 10 months ago
- Email:
- n**@clin.au.dk
Posts by nhs
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... Hi Jen
Works, thanks a billion
/NHS ...
written 23 months ago by
nhs • 0
0
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... Hi
I have reached my disk quota prematurely at <150 GB, could you please advise on how to resolve or correct for me.
Thanks a bunch
/NHS ...
written 23 months ago by
nhs • 0
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... Hi
Running plotCoverage (Deeptools) on a single (or multiple) filtered BAM file(s) returns a completed job with the following error message:
empty
format png database hg38
The number of labels does not match the number of BAM files.
what does labels cover in this context? and how can these be cha ...
written 23 months ago by
nhs • 0
• updated
23 months ago by
Jennifer Hillman Jackson ♦ 24k
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... Hi
After applying FixMate and filtering on "isMapped" and "isMatemapped" (and quality and no duplicates) I still have a considerable amount of reads flagged as Mate_Not_Found when running ValidateSam. Mapping to different chromosomes seems not to be the issue judged by Flagstat.
How can I get rid o ...
written 24 months ago by
nhs • 0
• updated
24 months ago by
Jennifer Hillman Jackson ♦ 24k
0
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... Hi
After the update the Picard tool "ValidateSamFile" in the summary output mode returned the following error (verbose works fine).Do I need to adjust any settings?
Thanks..
236 ValidateSamFile on data 232: BAM validation summary
empty
formattxtdatabasehg38
Warning: Exit code 1 () Picked up _JAVA ...
written 2.0 years ago by
nhs • 0
• updated
24 months ago by
Jennifer Hillman Jackson ♦ 24k
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