User: zachary.gaber

gravatar for zachary.gaber
Reputation:
80
Status:
Trusted
Location:
United Kingdom
Last seen:
1 day, 16 hours ago
Joined:
2 years, 4 months ago
Email:
z************@crick.ac.uk

Posts by zachary.gaber

<prev • 26 results • page 1 of 3 • next >
0
votes
1
answer
79
views
1
answers
Answer: A: Local Galaxy. Trimmomatic does not see fastq files.
... Hello, I had a similar issue with Trimmomatic earlier this week. I uploaded .gz files which Galaxy decompressed and identified as fastq files. Trimmomatic couldn't recognize the files when run from the tool bar - although oddly, workflows which had Trimmomatic as the first step in the process had ...
written 20 days ago by zachary.gaber80
0
votes
1
answer
238
views
1
answers
Comment: A: "An error occurred setting the metadata for this dataset"
... Hello Jennifer - I just reran the same workflow on the same data that's been getting bugged - seems to work now! Thanks for fixing this! ...
written 3 months ago by zachary.gaber80
0
votes
1
answer
238
views
1
answers
Comment: C: "An error occurred setting the metadata for this dataset"
... Hello Jennifer, I did what you asked and sent an email containing links to this thread and my shared history with the bug. It's been happening very consistently (more than 75% of the time I try to run these operations I get a bug) for me for at least the past 24 hours so hopefully you guys won't ha ...
written 3 months ago by zachary.gaber80
0
votes
1
answer
238
views
1
answers
Comment: A: "An error occurred setting the metadata for this dataset"
... I'm also having this same or very similar error message with with programs like FASTQC and Trimmomatic. I have workflows I've used repeatedly in the past quite successfully - now they're failing but it seems that random steps in the process are failing. For example, one workflow has two FASTQC ste ...
written 3 months ago by zachary.gaber80
1
vote
1
answer
206
views
1
answers
Comment: A: is Galaxy down?
... I'm also from the UK and have been having the same problem all morning. I can't log on to the website or the FTP site. ...
written 3 months ago by zachary.gaber80
0
votes
2
answers
145
views
2
answers
Answer: A: FTP Server Uploading Problem
... Hello Nate, thanks for the reply. I was using different computers. The ftp clients (Filezilla) were the same as were the settings, but they were the settings I've always used in the past without any problems. ...
written 4 months ago by zachary.gaber80
1
vote
2
answers
145
views
2
answers
FTP Server Uploading Problem
... Hello, I've been trying to upload files via FTP for about a week now and the server has varied between slow and completely non-functional. I'm able to log-in successfully, but files either upload incredibly slowly (dropping down to bytes per second) or sometimes the connection just times out. I've ...
ftp uploading written 4 months ago by zachary.gaber80
0
votes
7
answers
858
views
7
answers
Answer: A: DiffBind on Galaxy
... Has any progress been made on this issue? I tried to use diffBind today and had the exact same error message as reported here. ...
written 7 months ago by zachary.gaber80
0
votes
2
answers
229
views
2
answers
Comment: C: Gradual Loss of Connection to Galaxy
... I was having the same problem with Galaxy when used in Firefox until just a few minutes ago, but Galaxy running in Chrome (which I usually don't run it in) has been working all day. This problem is intermittant and may come back but seems to be gone at the moment. Thanks for your interest. I will ...
written 7 months ago by zachary.gaber80
0
votes
2
answers
229
views
2
answers
Comment: C: Gradual Loss of Connection to Galaxy
... I've had mixed results today. I normally run Galaxy in Firefox and it wasn't working at all there until just when I went to look in the developer tools as you suggested, at which point it decided to work again and there were no error messages that I observed. I was able to successfully run Galaxy ...
written 7 months ago by zachary.gaber80

Latest awards to zachary.gaber

Scholar 2.4 years ago, created an answer that has been accepted. For A: Has FASTQC disappeared from usegalaxy?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 79 users visited in the last hour