User: zachary.gaber

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United Kingdom
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2 months ago
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1 year, 11 months ago
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z************@crick.ac.uk

Posts by zachary.gaber

<prev • 19 results • page 1 of 2 • next >
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Answer: A: DiffBind on Galaxy
... Has any progress been made on this issue? I tried to use diffBind today and had the exact same error message as reported here. ...
written 9 weeks ago by zachary.gaber60
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Comment: C: Gradual Loss of Connection to Galaxy
... I was having the same problem with Galaxy when used in Firefox until just a few minutes ago, but Galaxy running in Chrome (which I usually don't run it in) has been working all day. This problem is intermittant and may come back but seems to be gone at the moment. Thanks for your interest. I will ...
written 12 weeks ago by zachary.gaber60
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Comment: C: Gradual Loss of Connection to Galaxy
... I've had mixed results today. I normally run Galaxy in Firefox and it wasn't working at all there until just when I went to look in the developer tools as you suggested, at which point it decided to work again and there were no error messages that I observed. I was able to successfully run Galaxy ...
written 12 weeks ago by zachary.gaber60
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Gradual Loss of Connection to Galaxy
... Hello, I've been having a problem with the main Galaxy server for several weeks now. I will start out at the beginning of the day able to use Galaxy perfectly normally but I seem to gradually lose my ability to access Galaxy. I'll get a few error messages about "Unable to Connect to Galaxy" but de ...
network error software error connection written 3 months ago by zachary.gaber60 • updated 12 weeks ago by Nate Coraor3.0k
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Answer: A: How do I define a format I uploaded to Galaxy to be "interval", and the genome
... Hit the little pencil icon on the top right of the uploaded item. The datatype tab will appear near the top of the center window, genome can be specific from a dropdown somewhere else in the central window. You can also specify these things at the time of upload. ...
written 3 months ago by zachary.gaber60
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Answer: A: Is the usegalaxy.org server working
... I had the same problem yesterday at around the same time - I was trying to upload files from my directly computer (not via the FTP) - and I couldn't upload anything. But I tried again a few hours later and they went straight through. Might have been a temporary issue rather than your FTP settings. ...
written 3 months ago by zachary.gaber60
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Answer: A: Queueing issues on usegalaxy.org
... I'm not sure about your precise problem - but I'd leave the jobs in the queue just in case the queue is really long for whatever reason. You don't want to lose your place if your files are still in the queue. But I'd also create a new history and re-upload the files in that, just to see if maybe t ...
written 3 months ago by zachary.gaber60
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Answer: A: Workflow cannot run
... Hello this problem just started occurring for me today and it started suddenly. I quickly ran the same workflow three times on three datasets - and the first and third were added to history but not the second. And since then it's just stopped completely. I retried running workflows five or six ti ...
written 3 months ago by zachary.gaber60
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Answer: A: Galaxy Upload File Won't Run
... My jobs seem to be running and uploading okay for what it's worth. I've occasionally had files just seem to get lost in the processing queue. Not sure why. You might want to try re-uploading the file, see if it goes through this time. Don't delete the greyed out file just yet - just in case it r ...
written 11 months ago by zachary.gaber60
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BED or Interval metadata problem with strand assignment
... Hello, I'm having a problem with many bed files I upload or create in Galaxy. Galaxy keeps identifying a strand column, even when there is no strand column and I cannot uncheck the strand column box. This is a huge problem because when it missassigns the strand column, the files become worthless - ...
edit attributes metadata bug bed strand written 11 months ago by zachary.gaber60 • updated 8 months ago by Jennifer Hillman Jackson22k

Latest awards to zachary.gaber

Scholar 23 months ago, created an answer that has been accepted. For A: Has FASTQC disappeared from usegalaxy?

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