User: jpvillemin

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jpvillemin10
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New User
Location:
France
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2 years, 9 months ago
Joined:
3 years, 4 months ago
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Posts by jpvillemin

<prev • 12 results • page 1 of 2 • next >
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Comment: C: Two instances on different server with only one postgres database ?
... Didn't find an answer galaxy-dev@lists.galaxyproject.org on. Maybe you know if it's possible to configure multiple instances sharing histories, dataset, users on several servers ? ...
written 2.9 years ago by jpvillemin10
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Comment: C: Two instances on different server with only one postgres database ?
... Is it possible to set a kind of mirroring ? Multiple instances on several instances (each with his own database) sharing same histories, dataset etc... ...
written 2.9 years ago by jpvillemin10
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Two instances on different server with only one postgres database ?
... Is this possible to set two instances of galaxy on server 1 and server 2, and to install only one database on server 1 for both of them. I 'm actually trying to do that. The two instances launch well but when i try to upload file , I get some erros about failing the erase of some metada ....I'm not ...
infrastructure configuration written 2.9 years ago by jpvillemin10 • updated 2.9 years ago by Jennifer Hillman Jackson25k
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Comment: C: How to select multiples files as inputs to parse them simulaneously ?
... I'm not familiar with python... And the inputs name , i want to concatenate are in hash. I'm using :  #set $pathOuput = "TEST" #silent sys.stderr.write($pathOuput) #for $bam_count, $input_bam in enumerate( $input ): #$pathOuput += $pathOuput + $input_bam.name #end for #si ...
written 3.4 years ago by jpvillemin10
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Comment: C: How to select multiples files as inputs to parse them simulaneously ?
... ok thanks great, i will take a look to cheetah.  I want do to do a concat string inside a loop ? what is the syntax to do that? i'm not at work so i can't share my=y code but i tried some code but i didn't suceed to make it work. I wan to read my input dataset...PA1,PA2,PA3 as you said : #for $i ...
written 3.4 years ago by jpvillemin10
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Comment: C: How to select multiples files as inputs to parse them simulaneously ?
... Yeah kind of, You can execute python code using # ?   ...
written 3.4 years ago by jpvillemin10
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Comment: C: How to select multiples files as inputs to parse them simulaneously ?
... I will try to explain better what i'd like to do. I can have several input csv files. One file is for one patient. Imagine for example, 3 files (PA1.csv,PA2.csv,PA3.csv) Each input will have an output xls file where i compute ratio for the current patient vs each other. So i need to read the cont ...
written 3.4 years ago by jpvillemin10
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Answer: A: Migrating 14.02 to 15.05 : KeyError: 'tool_test' after migrate_tools/0012_tools.
...   sh ./scripts/migrate_tools/0012_tools.sh -c universe_wsgi.ini install_dependencies <!-- <section id="tool_test" name="tool_test"> <tool file="test/python_version.xml" /> </section>--> ...
written 3.4 years ago by jpvillemin10
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How to select multiples files as inputs to parse them simulaneously ?
... The question is in the title. I begin with Galaxy :) I want to make some statistics on several files. The number of files to treat together can change. (3 or more) For this,I  need to parse several files to get their values. My pipeline do that but i'd like to be able to integrate it inside galaxy ...
input written 3.4 years ago by jpvillemin10 • updated 3.4 years ago by Bjoern Gruening5.1k
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Comment: C: Migrating 14.02 to 15.05 : KeyError: 'tool_test' after migrate_tools/0012_tools.
... Ohh ok sorry, thanks :) If i comment this script section in tool_conf.xml, the command seems to work well : sh ./scripts/migrate_tools/0012_tools.sh -c universe_wsgi.ini install_dependencies <!-- <section id="tool_test" name="tool_test"> <tool file="test/python_version.xml" /& ...
written 3.4 years ago by jpvillemin10

Latest awards to jpvillemin

Scholar 3.4 years ago, created an answer that has been accepted. For A: Migrating 14.02 to 15.05 : KeyError: 'tool_test' after migrate_tools/0012_tools.

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