User: William Light

gravatar for William Light
Reputation:
50
Status:
New User
Location:
Last seen:
6 years ago
Joined:
6 years, 7 months ago
Email:
l*****@u.northwestern.edu

Posts by William Light

<prev • 4 results • page 1 of 1 • next >
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Question About Uploading Custom Index For Bowtie
... I recently tried to upload a custom made index for bowtie using Filezilla as my FTP source, but I got an error message, I think due to the autodetect for file type not recognizing this file type. Is there something special that I should do to upload my six .ebwt files for my reference? ...
bowtie alignment written 6.1 years ago by William Light50 • updated 6.0 years ago by Jennifer Hillman Jackson24k
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Question About Building A Reference Genome Index Using Bowtie
... I am trying to compare two genetically different strains that I have sequenced using SOLiD. I was trying to ask where these two strains are different, either in terms of deletions or polymorphisms, and one idea I had was to use Bowtie to create an index from one of these strains and then to map my ...
bowtie alignment written 6.3 years ago by William Light50
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Answer: A: Question About Using Bowtie
... I have created fixed-step wiggle files for a project that I am working on, but I am wondering if there is an easy way to transform the values by a correction factor to account for differences in in the number of reads for two different samples (one had 1.5 million or so, the other had 6.6million). ...
written 6.6 years ago by William Light50
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Question About Using Bowtie
... I am trying to use bowtie to assign reads to the s. Cerevisiae genome. I have data from paired end SOLiD sequencing with two unique six base pair barcodes. Can I use bowtie to make csfasta and qual files from my mixed original data split by bar code? I know I can use the trim option to remove the ...
bowtie alignment written 6.6 years ago by William Light50

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