User: mccoykg

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mccoykg80
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1 year, 5 months ago
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2 years, 3 months ago
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m******@bc.edu

Posts by mccoykg

<prev • 60 results • page 1 of 6 • next >
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Comment: C: trouble installing a custom tool from a toolshed: complete dependency hierarchy
... Alright cool, I'll look into that! I do think it's not an error on the repository's side since we got the same error for multiple capsules, I'll try contacting the person in charge of the toolshed. ...
written 17 months ago by mccoykg80
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Import Repository Capsule Error on Private Toolshed
... Hi all! I'm trying to import bowtie 0.12.7 and biopython 1.65 from repository capsules to a private toolshed, but both are giving me the same error. For reference I'm just downloading their tar.gz files from the main toolshed and using the "Import Repository Capsule" tool to try to import them. I've ...
repository capsule toolshed written 17 months ago by mccoykg80
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trouble installing a custom tool from a toolshed: complete dependency hierarchy error
... Hi all! When I try to install a custom tool with biopython as a dependency from a private toolshed, I get the following error: The complete dependency hierarchy could not be determined for this repository, so no required repositories will not be installed. This is likely due to invalid repository d ...
toolshed written 17 months ago by mccoykg80 • updated 17 months ago by Jennifer Hillman Jackson22k
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Not authorized to import repository capsule
... When attempting to import the biopython repository from a capsule, I get the message "Import not necessary: repository status for this Tool Shed is: Not authorized to import" for every repository in the capsule. Is there a way to get authorization and fix this, or should I be doing something differe ...
capsule import biopython written 18 months ago by mccoykg80
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Answer: A: Importing a Repository Capsule
... Oh, I see! That makes sense. Thanks for answering this so quick! ...
written 18 months ago by mccoykg80
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Importing a Repository Capsule
... Hi all! I'm trying to get the biopython package onto a private toolshed, but having trouble with this. I've tried exporting the package as a capsule, which gives me a folder holding files called export_info.xml and manifest.xml plus a bunch of tar.gz files. When attempting to import this repository ...
repository capsule biopython written 18 months ago by mccoykg80
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Comment: C: Can Dependencies Be Handled in Custom Tools?
... OK cool, I'll do that. ...
written 22 months ago by mccoykg80
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Comment: C: Can Dependencies Be Handled in Custom Tools?
... Thanks! So what would be the correct mechanism for managing dependencies for tools outside of a toolshed / in the "tools" folder of an instance? ...
written 22 months ago by mccoykg80
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Can Dependencies Be Handled in Custom Tools?
... I've got several custom tools that are going to be published on the toolshed but are not currently. Right now they hard-code the paths to the tool dependencies, but I was wondering if there's a way to handle their dependencies with a tool_dependencies.xml like toolshed tools have? A colleague told m ...
custom tools dependencies written 22 months ago by mccoykg80 • updated 22 months ago by Jennifer Hillman Jackson22k
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Comment: C: Confusing FastX_Barcode_Splitter Error
... I just tried it and it works perfectly! It also works on the Mac instance! Thank you so much. :) ...
written 22 months ago by mccoykg80

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