User: michimaurin

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michimaurin20
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2 years, 5 months ago
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2 years, 7 months ago
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Posts by michimaurin

<prev • 11 results • page 1 of 2 • next >
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Comment: C: CUffDIFF fatal exit code Error 139
... Jen! tried cuff Quant already , and got the run of one of the samples to give me output but it does not give me a gtf file so , how do I do cuffmerge on it and use it at cuff diff, is there a place I can read on this?I have been watching David coil youtube videos , but on this point they do not hel ...
written 2.5 years ago by michimaurin20
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Answer: A: CUffDIFF fatal exit code Error 139
... I know this might be very technical, but I rather ask, what is the difference between the gtf file that comes from cuff merging the files out of cufflinks, vs, the gtf file that would be got out of cuffcuant?my guess is that it's an aditional step in the normalization or something . Thanks a lot all ...
written 2.5 years ago by michimaurin20
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Answer: A: CUffDIFF fatal exit code Error 139
... Cool will do the reading on cuffcuant  to see what kind of parameters to give and will give it a shot. Thanks for sticking around ;) ...
written 2.5 years ago by michimaurin20
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Answer: A: CUffDIFF fatal exit code Error 139
... Jen ! So Technically  I cannot use the galaxy , for differential expression if I have replicates , is that what I read?? I just want to make sure so I can give feedback to "my boss" Thanks    MM ...
written 2.5 years ago by michimaurin20
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Answer: A: CUffDIFF fatal exit code Error 139
... One more comment , the spaces added here for the identifiers were not included in the actual run , the actual run has no spaces  ...
written 2.5 years ago by michimaurin20
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Comment: C: CUffDIFF fatal exit code Error 139
... I am using usegalaxy.org server tried using both the default server and the regular server and both came back with the same error , I submitted the bug report along with this link , thanks a lot I deeply appreciate your help  ...
written 2.5 years ago by michimaurin20
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Answer: A: CUffDIFF fatal exit code Error 139
... Done let me know if you all got it :) ...
written 2.5 years ago by michimaurin20
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Comment: C: Issue running Cuffdiff using Cuffmerge gtf output
... Hi I have a similar problem and used your same pipe line , where you able to debug and get your differential expression ?? I would appreciate your input    Michelle  ...
written 2.5 years ago by michimaurin20
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Answer: A: Problems with Cufflinks 2.2.1.0 on local instance
... I have the same error , I wonder if we have too big of a data or something    ...
written 2.5 years ago by michimaurin20
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CUffDIFF fatal exit code Error 139
... Hi My cuffdiff run does not continue , it stops and says  FATAL error exit code 139(),  My function parameters are  Condition I 2 replicate bam files ( my replicate alignments)  Condition II 2 replicate bam files ( my second set of replicate alignments or second experimental conditioN) GTF file prov ...
galaxy software error rna-seq written 2.5 years ago by michimaurin20

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