User: krishnakarthik.vemuri

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Posts by krishnakarthik.vemuri

<prev • 5 results • page 1 of 1 • next >
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Difference between Fastq and Fastqsanger?
... Hi,  Can somebody briefly explain the difference between fastq and fastqsanger files in Galaxy? I have tried to download fastq files from an experiment using the EBI SRA tool, and tried to run Tophat on them to get BAM files for further analysis, but in the Tophat tool, I get a message saying no fa ...
fastqsanger datatype format tools fastq written 2.6 years ago by krishnakarthik.vemuri10 • updated 2.6 years ago by Jennifer Hillman Jackson23k
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Can't use Tophat on Galaxy.
... Hi,  I am having difficulty figuring out the Tophat tool on Galaxy. I was trying to use the Tophat tool to map fastq files that  I uploaded from EBI SRA. I am unable to run the Tophat, on it, since Tophat does not appear to be recognizing the file. I have tried to run Tophat on another fastq file f ...
datatype fastq tools tophat attributes written 2.6 years ago by krishnakarthik.vemuri10 • updated 2.6 years ago by Martin Čech ♦♦ 4.2k
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Comment: A: Where can I find the FastQC tool on the Galaxy webpage?
... I can see the tool now, thanks all for your help. I am not sure what went right and what went wrong, but thanks again. ...
written 2.6 years ago by krishnakarthik.vemuri10
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Comment: C: Where can I find the FastQC tool on the Galaxy webpage?
... I am not able to see it...all I get when I type 'FastQC', 'fastqc' or 'FASTQC' into the search bar is the 'Combine FASTA and QUAL' tool under NGS:QC and Manipulation. I can't understand where the problem is.. ...
written 2.6 years ago by krishnakarthik.vemuri10
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Where can I find the FastQC tool on the Galaxy webpage?
... Hi,  I am attempting to recreate an RNA Seq differential expression analysis of a previously published experiment. I have obtained the fastq files for this through EBI SRA, but I am not able to locate the FastQC tool to start my work off. I expected to find it under 'NGS:QC and Manipulation', but f ...
galaxy fastqc rnaseq written 2.6 years ago by krishnakarthik.vemuri10

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