User: Anna

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Anna0
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3 years, 3 months ago
Joined:
3 years, 3 months ago
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a*****@nyu.edu

Posts by Anna

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Extract Genomic DNA - no recognized datasets
... Many thanks, much appreciated! Anna ...
written 3.3 years ago by Anna0
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Answer: A: Extract Genomic DNA - no recognized datasets
... I think I have figured out what I am trying to do, I'm posting my solution here in case it helps somebody else. I am not using Extract Genomic DNA to retrieve the sequences I want after all. By reading the suggestion in this query I figured it out: https://www.biostars.org/p/77642/. To extract cons ...
written 3.3 years ago by Anna0
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Answer: A: Extract Genomic DNA - no recognized datasets
... Jen, Thanks so much for your quick response!  Now that I have changed the Dataype of the pileup to "pileup" (the default assignment was "tabular"), it is recognized by the Extract Genomic DNA tool, thank you. I'm not sure that I follow what you are saying next, though. My goal is to end up with a ...
written 3.3 years ago by Anna0
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Extract Genomic DNA - no recognized datasets
... Hi, I am new to galaxy. I wish to use the Extract Genomic DNA tool, but under "Fetch sequences for intervals in" it says "No interval or gff dataset available." In my history, I have a tabular interval dataset generated by Pileup-to-Interval, which was created via Generate Pileup from BAM. The buil ...
galaxy consensus sequence written 3.3 years ago by Anna0

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