User: kunaphas.kon

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Posts by kunaphas.kon

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Comment: C: Problem BWA in Galaxy Tool
... I follow your link and I got error below  E::bwa_idx_load] fail to locate the index files     ...
written 2.8 years ago by kunaphas.kon0
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Answer: A: Problem BWA in Galaxy Tool
... Hi Jennifer I just installed  Map with BWA (Version 0.7.5) This new version BWA (0.7.5) use 'mem' algorithm for mapping, dosen't need 'aln', 'samse', 'sampe' and picard AddOrReplace anymore. (Galaxy Tool Version 0.7.5) from tool shed but when I run it , it  show error below  Could not determine ...
written 2.8 years ago by kunaphas.kon0
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Answer: A: Using Gatk Queue on Galaxy tool
... Oh acttually , I mean  I already warp   variant calling process using GATK queue , and I want to apply it as a single box in galaxy tool ,but I don't know how to apply it because my script write in java  or I have to create another script to connect betweeon my GATK queue and galaxy ,btw I will take ...
written 2.9 years ago by kunaphas.kon0
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Using Gatk Queue on Galaxy tool
... I already build script using GATK queue , btw are there any specific tutorial that can guide me to set up my gatk queue to my local galaxy tool or just follow add-tool tutorial in galaxy document. Any suggestion are most welcome  Thank you,  Note ...
gatk galaxy gatk-queue written 2.9 years ago by kunaphas.kon0
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Comment: C: Problem BWA in Galaxy Tool
... thank you for answering me ,I'm curies if there any possible to create index from ref outside galaxy and upload those files into galaxy.After that, I can use it with BWA rather than using tool bwa index builder in Toolshed. Sincerely yours, Note   ...
written 2.9 years ago by kunaphas.kon0
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Problem BWA in Galaxy Tool
... Hello everyone I'm a new guy in galaxy tool I try to run BWA tool that I install it from  Galaxy main tool shed. but I got this error after run Generating BWA index with is algorithm [bwa_index] Pack FASTA... 40.74 sec [bwa_index] Construct BWT for the packed sequence... Aborted [bwt_restore_sa] ...
galaxy bwa written 3.0 years ago by kunaphas.kon0

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Popular Question 2.8 years ago, created a question with more than 1,000 views. For Problem BWA in Galaxy Tool

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