User: Edward Turk

gravatar for Edward Turk
Edward Turk100
Reputation:
100
Status:
New User
Location:
Last seen:
5 years, 10 months ago
Joined:
7 years ago
Email:
e*********@mac.com

Posts by Edward Turk

<prev • 10 results • page 1 of 1 • next >
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Comment: C: Install Galaxy On Mac
... Thanks Jen, Hans, and Scott, I have it running on my laptop now and here are the steps I followed: Install Galaxy on MacBook Pro OS10.7.4 (08-10-2012) • Install Mercurial http://mercurial.selenic.com/wiki/ • Open Applications/Utilities/Terminal.app • Confirm Mercurial insta ...
written 5.9 years ago by Edward Turk100
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Comment: C: Install Galaxy On Mac
... Jen - Getting Closer! - But not there yet. Getting Galaxy seems to have worked. Here is the last line from Terminal: mbio-edt:~ edwardturk$ cd mbio-edt:~ edwardturk$ hg clone http://bitbucket.org/galaxy/galaxy- dist warning: bitbucket.org certificate with fingerprint 24:9c:45:8b:9c:aa:ba:55:4e:01:6 ...
written 5.9 years ago by Edward Turk100
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Comment: C: Install Galaxy On Mac
... Hi Jen, Yes, it is best to assume I know nothing about programming. I installed Mercurial, but don't know how to check that it was successful other than it said so. Removing % helped, but said I do not have permission: Install Galaxy on Mac OS10.7 1. Open Applications/Utilities/Terminal.app 2. Che ...
written 5.9 years ago by Edward Turk100
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Answer: A: Install Galaxy On Mac
... Both responses worked for checking python version, but trying to download gave an error: Install Galaxy on Mac OS10.7 1. Open Applications/Utilities/Terminal.app 2. Check Python version by pasting in "python -V", no quotes, and hit return response = Python 2.7.1 3. Get Galaxy by pasting in ...
written 5.9 years ago by Edward Turk100
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Install Galaxy On Mac
... Hello, Could someone provide instructions for installing galaxy on a Mac OS 10.7? The instructions provided by galaxy start off by asking me to check my python version, but I don't know how to do that. I figure someone has step-by-step instructions or a screen cast? Thank you, Edward ...
galaxy written 5.9 years ago by Edward Turk100 • updated 5.9 years ago by Hotz, Hans-Rudolf10
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Comment: C: Merge Fastq Databases
... Alex, Thanks that worked. I was thrown off by the word concatenate, which I mistakenly thought would join reads together (reads remain separate), and by the absence of the word merge, which is used when referring to combining two BAM datasets together in Galaxy. It seems to me that the tool to combi ...
written 6.5 years ago by Edward Turk100
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Merge Fastq Databases
... Hi Galaxy Users, Can FASTQ Databases be merged using Galaxy? Thanks, Edward ...
galaxy written 6.5 years ago by Edward Turk100 • updated 3.3 years ago by nls52310
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Filter Out Positive Strand
... Hello all, I have used Tophat to map and now I want to filter out all reads that mapped to the positive strand. Any help would be greatly appreciated. Thanks, Edward Turk ...
tophat rna-seq written 6.9 years ago by Edward Turk100
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Comment: C: Yeast Genome Assembly
... Hi Jen, Could you update the yeast genome to match the following 2011 release? Ensembl release 9 for Fungal database (which is dependant on SGD database) [link : http://fungi.ensembl.org/Saccharomyces_cerevisiae/Info/Index]. Thank you, Edward Dr. Edward Turk, Ph.D. Postdoctoral Fellow Dep. of M ...
written 7.0 years ago by Edward Turk100
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Yeast Genome Assembly
... For yeast analysis I use the following assembly: S. cerevisiae June 2008 (SGD/sacCer2) (sacCer2). Recently a new yeast genome has appeared as an option in Galaxy: S. cerevisae str. S288C (Saccharomyces_cerevisiae_S288C_SGD2010). Is this an update to sacCer2? Where is it coming from? I don't see it a ...
assembly written 7.0 years ago by Edward Turk100 • updated 7.0 years ago by Jennifer Hillman Jackson25k

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