User: rgambhir

gravatar for rgambhir
rgambhir10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
3 years ago
Joined:
3 years, 1 month ago
Email:
r*******@tulane.edu

Posts by rgambhir

<prev • 7 results • page 1 of 1 • next >
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annotation issues with ANNOVAR
... Hi All, I am trying to annotate a Vcf file that I generated using the VarScan. I could visualize this file on the IGV but I am not able to annotate it using the ANNOVAR. I am not sure what is the problem. Appreciate your help Regards Ratish ...
software error written 3.0 years ago by rgambhir10 • updated 3.0 years ago by Jennifer Hillman Jackson24k
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using 100% space
... I am using the GALAXY and it says i have used 100% of space. how do I reduce the usage amount. Please let me know. Thank you Ratish     ...
software error written 3.1 years ago by rgambhir10 • updated 3.1 years ago by Martin Čech ♦♦ 4.6k
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pipeline for DNA-seq analysis
... Thanks for all your help. Finally I got the data uploaded on the Galaxy. As suggested there was a problem in uploading my fastaq.gz files. now everything looks fine. i would like to start analyzing my data. I looked at the FASTQC reports and everything looks good. I have DNA sequences derived from p ...
data-prep alignment fastq written 3.1 years ago by rgambhir10 • updated 3.1 years ago by Jennifer Hillman Jackson24k
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FASTQC issue getting error in web page
... Thank you for that. I did finally upload my sequence using the file zilla. First I changed my .gz file into fastq using the gunzip command on the terminal. then uploaded this file using the ftp (filezilla). I was trying to do some FastQC on it and i could see my data on the RAW page but was unable t ...
fastq fastqc format upload error written 3.1 years ago by rgambhir10 • updated 3.1 years ago by Jennifer Hillman Jackson24k
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.gz decompression error
... Hi, finally I was able to upload my files with help from Galaxy users. I just got 2 files with an extension .gz. I wanted to run a quick QC and I get the following error message. Please let me know how to address this. Thak you RG Problem decompressing gzipped data ...
software error written 3.1 years ago by rgambhir10 • updated 3.1 years ago by Jennifer Hillman Jackson24k
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Comment: C: uploading .gz files
... Hi Anton, thanks for your quick response. I am using OS X 10.9.5. do I need to download the FTP server online in that case which one is good. REgards RG Ratish Gambhira, DVM, MS, PhD, DACVM Instructor Dept. of Radiation Oncology Tulane Cancer Center Tulane University ...
written 3.1 years ago by rgambhir10
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uploading .gz files
... Hi , I am new to Galaxy and Bioinformatics. I just got data after DNA NGS data. I have data from 2 individuals. I downloaded the data from the server. I got files named fastq.gz. I was trying to upload them to Galaxy but it says the files are too big. each file in my case are 2.1Gb and I did the pa ...
galaxy written 3.1 years ago by rgambhir10 • updated 3.1 years ago by Anton Nekrutenko1.7k

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