User: e.rempel

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e.rempel20
Reputation:
20
Status:
New User
Location:
Germany
Last seen:
4 days, 6 hours ago
Joined:
2 years ago
Email:
e*******@dkfz-heidelberg.de

Posts by e.rempel

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Error installing Biopython 1.67
... Thank you, Jen. At the end, we used the suggestion in [Fix PyPI URL for biopython-1.67.tar.gz][1] and it worked. [1]: https://github.com/biopython/galaxy_packages/commit/581b206359f1f59f60b61f749dd3f7b6d6f045f7 ...
written 4 weeks ago by e.rempel20
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Error installing Biopython 1.67
... Dear Galaxy community, we experience difficulties with installing Biopython package (version 1.67). The error message is: Error downloading from URL https://pypi.python.org/packages/source/b/biopython/biopython-1.67.tar.gz : HTTP Error 404: Not Found It looks like the link https://pypi.python.or ...
dependency biopython written 5 weeks ago by e.rempel20
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Answer: A: Orphan dataset after Exporting history to file
... There is a simple solution to this problem (pointed out by Bjoern Gruening, thanks!): pgcleanup.py - A script for cleaning up datasets in Galaxy efficiently, by bypassing the Galaxy model and operating directly on the database (https://github.com/galaxyproject/galaxy/blob/dev/scripts/cleanup_dataset ...
written 6 weeks ago by e.rempel20
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Orphan dataset after Exporting history to file
... Dear all, we are running a local Galaxy (an older release) instance and encounter the following issue. After exporting history to file there is an "orphan" dataset left (in galaxy/database/files/...). It looks like it doesn`t belong to any history, thus the cleanup scripts cannot delete it. Of cour ...
export history written 7 weeks ago by e.rempel20
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Answer: A: Galaxy installation on ubunto failed while running run.sh
... I had a similar error message running a python script. I fixed it by installing python module "bx-python" via "pip" as follows pip install bx-python Be sure that you have the package "numpy" previously installed. Regards, Eugen Rempel     ...
written 15 months ago by e.rempel20

Latest awards to e.rempel

Scholar 4 weeks ago, created an answer that has been accepted. For A: Error installing Biopython 1.67

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