User: cwchen123

gravatar for cwchen123
cwchen12320
Reputation:
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Status:
New User
Location:
Taiwan
Last seen:
2 years, 8 months ago
Joined:
2 years, 8 months ago
Email:
c********@gmail.com

Posts by cwchen123

<prev • 8 results • page 1 of 1 • next >
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Link with "Open with IGV" and other things
... On the Galaxy in our local server, there is only link to Open with IGB but no link to Open with IGV. How can I restore these links?  Thanks a lot. ...
igv written 2.7 years ago by cwchen12320 • updated 2.7 years ago by Daniel Blankenberg ♦♦ 1.7k
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Comment: C: Can I get back "Operate on Genomic Interval" on local Galaxy instance?
... Thanks. I've found them. ...
written 2.7 years ago by cwchen12320
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Can I get back "Operate on Genomic Interval" on local Galaxy instance?
... After updating to a recent version, Operate on Genomic Interval was gone.  I tried to download another Galaxy instance, rolling back to previous version.  But these tools failed to show.  Can I get the tools in Operate on Genomic Interval? By downloarding from Tool Shed? ...
genomic interval local install toolshed written 2.7 years ago by cwchen12320 • updated 2.7 years ago by Jennifer Hillman Jackson23k
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Answer: A: DEXSeq error message on glmnb.fit
... The content of /tmp/tmp.v3DFzPqDRQ file is empty.  However, tmp.v3DFzPqDRQ_CONDITIONS.tab show the following message: condition libType dataset_6609 1 PE dataset_6620 1 PE dataset_6630 1 PE dataset_6641 1 PE dataset_6651 1 PE dataset_6604 ...
written 2.7 years ago by cwchen12320
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Answer: A: DEXSeq error message on glmnb.fit
... I'm not sure if this is the right file.  Check it out DEXseq-hts.sh: Oqtans http://galaxy.cbio.mskcc.org Galaxy wrapper for the DEXSeq version 1.6.0. DEXSeq: Detecting differential usage of exons from RNA-seq data. %%%%%%%%%%%%%%%%%%%%%%% % 1. Data preparation % %%%%%%%%%%%%%%%%%%%%%%% extra fi ...
written 2.7 years ago by cwchen12320
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Comment: C: DEXSeq error message on glmnb.fit
... The dexseq-hts repo: https://toolshed.g2.bx.psu.edu/view/vipints/deseq_hts Synopsis: A Galaxy wrapper for DESeq version 1.12, DESeq2 version 1.0.19 and DEXSeq version 1.6 Thanks for your reply. ...
written 2.7 years ago by cwchen12320
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Comment: C: DEXSeq error message on glmnb.fit
... The version of DEXSeq is 1.6 ...
written 2.7 years ago by cwchen12320
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DEXSeq error message on glmnb.fit
... When I tried DEXSeq on Galaxy on the server of my lab, the DEXSeq session halt and showed the following error message:  Error in glmnb.fit(mm, y, initialGuess, mf$offset, start = start) : All weights must be positive Error in glmnb.fit(mm, y, initialGuess, mf$offset, start = start) : All weigh ...
rna-seq galaxy dexseq written 2.7 years ago by cwchen12320

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