User: amitpande74

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amitpande7410
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Posts by amitpande74

<prev • 9 results • page 1 of 1 • next >
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conda prefix galaxy local instance
... Hi, I have a local instance of galaxy )version 17.01) from github. I installed miniconda3 in my home directory. I want galaxy to use the conda executable from miniconda3 in my home directory. Accordingly, I set the galaxy.sample.ini configuration as : > # conda_prefix is the location on the fil ...
galaxy conda written 5 months ago by amitpande7410
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Possible PATH problem when installing tools in a local
... Hi, I am trying to install oqtans into local galaxy. Oqtans_tools folder has a file tool_conf.xml.oqtans. I copied this into the tool conf xml main file....why does it give error ? https://ibb.co/m5CVfv Can someone help ? regards. ...
local install tool_conf.xml admin tool written 6 months ago by amitpande7410 • updated 6 months ago by Jennifer Hillman Jackson23k
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Answer: A: local galaxy instance file upload error
... WSGI Variables -------------- application: controller_action_key: u'web.library_common.upload_library_dataset' is_api_request: False paste.cookies: (, 'galaxysession=c6ca0ddb55be603a6db6f10c014c1c7813ab64b080771df5777fc03416597f2ae4cf54d7c3c7833e') paste.expected_exceptions: [] paste.ht ...
written 6 months ago by amitpande7410
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local galaxy instance file upload error
... ![Hi][1] I am getting this error while uploading files to the local galaxy ! Kindly help [1]: https://ibb.co/itRZ3F ...
software error written 6 months ago by amitpande7410
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Answer: A: Deseq2 error running R script
... Hi Jennifer, I tried all possible ways to install deseq2_hts ...updated the galaxy version to 17.01...but still it requires oqtans to be installed which is not available in the dependencies. The fact with deseq2_hts is that one can analyze BAM files and then take the count tables to analyze them f ...
written 6 months ago by amitpande7410
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Answer: A: Deseq2 error running R script
... Hi Jennifer, I thought I had cracked the problem by configuring R. But the package I was trying to install is deseq2_hts from the tool shed repository. The deseq_config.sh.sample for this package requires oqtans package. Since this package depends on octave etc from the oqtans ....it seems like a n ...
written 7 months ago by amitpande7410
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Answer: A: Help, I can not connect with the FTP server galaxy/Hutlab
... I presume you have to upload NGS data .....and that you are using Linux......then the best way is to ask the admin to configure the vsftd conf file....from what I see the site does not support ftp right now....or configure the galaxy.ini files....ask your admin to do so. ...
written 7 months ago by amitpande7410
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Deseq2 error running R script
... Hi, I am having problems in running deseq2 package in my local galaxy installation. It says R broken pipe and stops. Kindly help. ![Deseq2 error] the host gif ...
rna-seq written 7 months ago by amitpande7410
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setting up ftp for local galaxy instance
... Hi,       I have been trying to setup an ftp for a local instance of Galaxy. I read the instructions at https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles But unfortunately could not see the mentioned files mentioned here "change the options library_import_dir and allow_libra ...
galaxy ftp written 2.7 years ago by amitpande7410 • updated 2.7 years ago by aysam.guerler70

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