User: Devon Ryan

gravatar for Devon Ryan
Devon Ryan1.9k
Reputation:
1,910
Status:
Trusted
Location:
Germany
Twitter:
dpryan79
Last seen:
3 days, 20 hours ago
Joined:
3 years, 3 months ago
Email:
d*******@gmail.com

Bioinformatician / data manager at the Max Planck Institute for Immunobiology and Epigenetics in Freiburg, Germany. I'm one of the developers for deepTools (among other packages).

Posts by Devon Ryan

<prev • 342 results • page 2 of 35 • next >
0
votes
2
answers
146
views
2
answers
Comment: C: interval file to fastq conversiosn
... Post a line or two of the interval file. ...
written 5 months ago by Devon Ryan1.9k
0
votes
2
answers
220
views
2
answers
Comment: C: Visualizing BigWig is UCSC genome browser: link not available
... Which Galaxy instance are you using? If you're using the DeepTools2 Galaxy server then this tended not to work, so I think I disabled it (it didn't work due to institute firewall policies). ...
written 5 months ago by Devon Ryan1.9k
0
votes
2
answers
738
views
2
answers
Comment: C: Help with using the multiBam Summary tool - error message
... It looks like the bigWig file is corrupt or empty. ...
written 5 months ago by Devon Ryan1.9k
4
votes
1
answer
312
views
1
answers
Answer: C: Problem with dependencies: Conda/freebayes
... Can you manually create the `__parallel@20170422` conda environment (it should have parallel-20170422 and perl-5.22.0.1)? I'm also running 17.09 and this all installed OK on my instance via conda. What may be happening is that conda is having trouble resolving a dependency for some odd reason (this ...
written 6 months ago by Devon Ryan1.9k
0
votes
1
answer
322
views
1
answers
Answer: C: Why does my GFF3 file not have any exons in the annotation lines read by HTseq-c
... Yes, it's missing exons. You should ask the authors why this is, since that's quite annoying. ...
written 6 months ago by Devon Ryan1.9k
1
vote
1
answer
151
views
1
answers
Comment: C: what i can do with this error
... Please post the actual error message. ...
written 6 months ago by Devon Ryan1.9k
1
vote
1
answer
309
views
1
answers
Answer: A: Can we map fastq files with paired ends using bwa mem on galaxy?
... Yes, bwa-mem can take a paired-end collection. ...
written 6 months ago by Devon Ryan1.9k
0
votes
1
answer
322
views
1
answers
Comment: C: Why the GFF file doesn't have any exons in anotation?
... Where did you get the file from? ...
written 6 months ago by Devon Ryan1.9k
0
votes
1
answer
312
views
1
answers
Comment: C: Problem with dependencies: Conda/freebayes
... Have you tried just reinstalling it? ...
written 6 months ago by Devon Ryan1.9k
0
votes
6
answers
1.4k
views
6
answers
Comment: C: How to create GFF file for HT seq
... Please post new questions as new posts in the future and not as answers to old posts. As the first warning indicates, you don't have any exons in your annotation. I have no idea how that happened, but you'll need to figure it out. ...
written 6 months ago by Devon Ryan1.9k

Latest awards to Devon Ryan

Scholar 9 weeks ago, created an answer that has been accepted. For A: Docker Galaxy Job conf file and SLURM
Scholar 6 months ago, created an answer that has been accepted. For A: Docker Galaxy Job conf file and SLURM
Teacher 6 months ago, created an answer with at least 3 up-votes. For C: Galaxy Tool Unit Test
Scholar 7 months ago, created an answer that has been accepted. For A: Docker Galaxy Job conf file and SLURM
Scholar 12 months ago, created an answer that has been accepted. For A: Docker Galaxy Job conf file and SLURM
Scholar 14 months ago, created an answer that has been accepted. For A: Sub groups within galaxy shed tool conf file
Scholar 14 months ago, created an answer that has been accepted. For A: Sub groups within galaxy shed tool conf file
Scholar 17 months ago, created an answer that has been accepted. For A: Sub groups within galaxy shed tool conf file
Teacher 17 months ago, created an answer with at least 3 up-votes. For C: Galaxy Tool Unit Test
Teacher 18 months ago, created an answer with at least 3 up-votes. For C: Galaxy Tool Unit Test
Scholar 18 months ago, created an answer that has been accepted. For A: Sub groups within galaxy shed tool conf file
Guru 19 months ago, received more than 100 upvotes.
Supporter 20 months ago, voted at least 25 times.
Scholar 21 months ago, created an answer that has been accepted. For A: Sub groups within galaxy shed tool conf file
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Unicode error after installing package_python_2_7_10
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Unicode error after installing package_python_2_7_10
Scholar 21 months ago, created an answer that has been accepted. For A: Sub groups within galaxy shed tool conf file
Scholar 21 months ago, created an answer that has been accepted. For A: Sub groups within galaxy shed tool conf file
Scholar 21 months ago, created an answer that has been accepted. For A: Specificy runner to use per tool
Scholar 21 months ago, created an answer that has been accepted. For C: gtf file error
Scholar 21 months ago, created an answer that has been accepted. For C: gtf file error
Scholar 21 months ago, created an answer that has been accepted. For C: gtf file error
Centurion 22 months ago, created 100 posts.
Scholar 23 months ago, created an answer that has been accepted. For A: Unicode error after installing package_python_2_7_10
Scholar 24 months ago, created an answer that has been accepted. For A: Unicode error after installing package_python_2_7_10

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 96 users visited in the last hour