User: Mo

gravatar for Mo
Mo40
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1 month, 1 week ago
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3 years, 6 months ago
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Posts by Mo

<prev • 15 results • page 1 of 2 • next >
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Comment: C: what is AB SOLiD System 2.0 in sequencing ?
... @Jennifer Hillman Jackson I followed exactly what you told me above, when used Grommer, it didnot work with uncomressed files, so I have to have 4 data (2 my uncompressed and 2 of the ones that I chnaged their data types) It is because they are paired-ended so I have 4. afterwards, it gave me one f ...
written 6 weeks ago by Mo40
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Comment: C: what is AB SOLiD System 2.0 in sequencing ?
... @Jennifer Hillman Jackson I started from very begining step, when I use **Fastq Groomer** and only those uncompressed ones, it gives an error but when I put everything there, it start running, is that supposed to be like that ? ...
written 6 weeks ago by Mo40
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Comment: C: what is AB SOLiD System 2.0 in sequencing ?
... @Jennifer Hillman Jackson Thanks a lot for your detailed explanation. I have gone through step 1 to step 3 . However, when I try to use HISAT2, it does not recognises the output. Can you please tell me how I should do it? Thanks a lot ...
written 6 weeks ago by Mo40
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Comment: C: Error from HISAT2 when using fasta data retrieved from Get Data: EBI SRA
... @Jennifer Hillman Jackson what should I do now ? I don't know how to reassign the fastq datatype to be fastqsanger.gz. I simply get them uploaded from the SRA. can you please guide me what I must do to resolve it because the post did not help much ...
written 7 weeks ago by Mo40
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what is AB SOLiD System 2.0 in sequencing ?
... Hello, Actually I want to know if such data should be analyzed the same way as those acquired with Illumina or ... I am trying to re-analyse this https://www.ebi.ac.uk/ena/data/view/SRX015657 Thanks for your comment ...
rna-seq illumina fastq solid written 7 weeks ago by Mo40 • updated 6 weeks ago by Jennifer Hillman Jackson25k
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(Closed) Error from HISAT2 when using fasta data retrieved from Get Data: EBI SRA
... I have uploaded files from EBI then I run the HIST with the following setting Source for the reference genome indexed Select a reference genome hg19 Single-end or paired-end reads? paired FASTA/Q file #1 5: EBI SRA: SRX015657 File: ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR033/SRR033795/SRR033795_1 ...
ebi fastqsanger fastqsanger.gz sra rna-seq written 7 weeks ago by Mo40 • updated 7 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: the storage problem
... @Martin Čech You are right I found it was hidden :-) ...
written 8 months ago by Mo40
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Comment: C: the storage problem
... @Martin Čech I did sent an email again to galaxy-bugs@lists.galaxyproject.org ...
written 8 months ago by Mo40
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Comment: C: the storage problem
... @Martin Čech thanks, I did it and I wait to see if anything happens :-) ...
written 8 months ago by Mo40
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Over disk quota - double check deleted versus perm-deleted dataset/history status
... I have been trying to remove everything but it still shows that it is full. I have signed out many times and nothing changed. I have deleted everyting both delete and delete permentantly is there an issue with galaxy ? ...
dataset history perm-delete purge delete written 8 months ago by Mo40 • updated 8 months ago by Jennifer Hillman Jackson25k

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