User: lax

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lax0
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3 years ago
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3 years, 3 months ago
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Posts by lax

<prev • 7 results • page 1 of 1 • next >
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Comment: C: GALAXY at HELIX will be discontinued from June 1st
... Thanks Jen for the info. I did contact the team couple of days ago, but haven't heard back yet. Although I heard from some other sources that the reason it was decided to discontinue Galaxy on helix servers is that it was becoming a 'labor intensive' task for the team to keep up. It still is not a g ...
written 3.2 years ago by lax0
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GALAXY at HELIX will be discontinued from June 1st
... I have been using GALAXY at Helix (http://helixweb.nih.gov/) for over an year, with great success and easiness, and I am little bit surprised to know this week that GALAXY at Helix will be discontinued from June 1st. I was wondering if Galaxy team has any idea why? I felt this decision to discontinu ...
servers galaxy public written 3.2 years ago by lax0 • updated 3.2 years ago by Jennifer Hillman Jackson25k
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Comment: C: TopHat2 run with the error message "The Cluster DRM System has terminated this J
... Hi Daniel -Thanks again. I just checked back my run, and actually did not copy and pasted the wrong traceback. However, I did hear back from my Galaxy at Helix admin, and it has to do with the memory associated with running TopHat2. Here is the message from the admin: "Galaxy is configured to run to ...
written 3.2 years ago by lax0
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Comment: C: TopHat2 run with the error message "The Cluster DRM System has terminated this J
... Hello Daniel -Thanks for the suggestion. That's a fastq file (fastq groomed) that I am trying to map with TopHat2.  When you say convert my SAM file, do you mean convert my fastq file to unmapped BAM file before using TopHat2 on that unmapped BAM file? Thanks again! ...
written 3.3 years ago by lax0
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Answer: A: TopHat2 run with the error message "The Cluster DRM System has terminated this J
... Hello again, I reran again one of the the "fastq groomed' files, and this time I got this error message. The error message I got on the same file in my previous run did not contain this message. All I got earlier was: " "The Cluster DRM System has terminated this Job".  I am pasting error message f ...
written 3.3 years ago by lax0
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TopHat2 run with the error message "The Cluster DRM System has terminated this Job"
... Hello, I use Galaxy regularly, and used TopHat2 earlier without any problem. However, just a day ago,  when I was trying to align 'fastq groomed' files with TopHat2, I was getting an error (after a long run): "The Cluster DRM System has terminated this Job". I learnt it's something to do with the li ...
bowtie2 tophat2 written 3.3 years ago by lax0
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Comment: C: TopHat for Illumina or TopHat2 for Illumina data - what's the difference?
... Hi Jen, I use Galaxy regularly, and used TopHat2 earlier without any problem. However, just a day ago,  when I was trying to align 'fastq groomed' files with TopHat2, I was getting an error (after a long run): "The Cluster DRM System has terminated this Job". I learnt it's something to do with the l ...
written 3.3 years ago by lax0

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