User: jarod_v6

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jarod_v60
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Italy
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1 year, 3 months ago
Joined:
2 years, 10 months ago
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j*******@libero.it

Posts by jarod_v6

<prev • 13 results • page 1 of 2 • next >
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Answer: A: Custom renaming datasets (use a workflow)
... Thanks but if I want to insert new datatype for manage that format? at the moment I don't use a workflow ...
written 15 months ago by jarod_v60
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Custom datatype / tool development
... Hi!!! I want to see all files finish like .out in a particular way . How can create a view? Thanks so much ...
dataset datatype tools develop written 15 months ago by jarod_v60 • updated 15 months ago by Jennifer Hillman Jackson23k
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Intallation problem on centos 7.0
... Hi there!! I try to install galaxy on a server cifs: Here is the error I obtain: > [maurizio@localhost galaxy]$ ls buildbot_setup.sh create_db.sh > LICENSE.txt rolling_restart.sh templates CITATION > cron locale run_reports.sh ...
cifs install written 18 months ago by jarod_v60
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Output visualization problem
... Dear All I tried to install fusionispector ans now seems they work. I mean the same output obtained from comand line I obtained on galaxy. However I have some problems because some of the ouput are not visible in galaxy. Here you can see the output are not displayed on my galaxy [ http://posti ...
fusion rnaseq visualitation written 20 months ago by jarod_v60 • updated 20 months ago by Jennifer Hillman Jackson23k
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Answer: A: No left space
... I have now also this error Traceback (most recent call last): File "/opt/galaxy/tools/data_source/upload.py", line 430, in __main__() File "/opt/galaxy/tools/data_source/upload.py", line 419, in __main__ add_file( dataset, registry, json_file, output_path ) F ...
written 21 months ago by jarod_v60
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Answer: A: No left space
... So it is also a problem of the permission. I have create a link on database paster1.log lrwxrwxrwx 1 galaxy galaxy 17 Apr 4 17:32 database -> /mnt/dati-galaxy/ -rw-r--r-- 1 galaxy galaxy 5337 Apr 4 18:02 integrated_tool_panel.xml I have two mai problems: this error: ...
written 21 months ago by jarod_v60
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No left space
... I Have this error __ return self.application(environ, start_response) File '/opt/galaxy/lib/galaxy/web/framework/base.py', line 133 in __call__ return self.handle_request( environ, start_response ) File '/opt/galaxy/lib/galaxy/web/framework/base.py', line 160 in handle_requ ...
setup written 22 months ago by jarod_v60
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Answer: A: Error on postgres db setting
... So Unfortunately I did not resolve > sh run.sh --daemon --log-file=paster.log WARNING:galaxy.eggs:Warning: pbr (a dependent egg of sqlalchemy-migrate) cannot b e fetched 2016-04-01 14:43:39,068 INFO sqlalchemy.engine.base.Engine select version() INFO:sqlalchemy.engine.bas ...
written 22 months ago by jarod_v60
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Answer: A: Error on postgres db setting
... Thanks so much for the help! It is a typo error: database_connection = postgresql://user:password@localhost/galaxydb I have this "pg_hba.conf" # TYPE DATABASE USER ADDRESS METHOD # "local" is for Unix domain socket connections only local ...
written 22 months ago by jarod_v60
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Error on postgres db setting
... Hi All! I try to use postgress database but I have this errors: migrate.versioning.script.base DEBUG 2016-03-30 10:37:40,873 Loading script lib/galaxy/model/migrate/versions/0120_dataset_collections.py... migrate.versioning.script.base DEBUG 2016-03-30 10:37:40,873 Script lib/galaxy/model/ ...
postgres galaxy written 22 months ago by jarod_v60

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