User: bornea27

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bornea2720
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Posts by bornea27

<prev • 11 results • page 1 of 2 • next >
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Comment: C: Users Having Access to Data On Different Server
... I have done the extra layer with some tools and that does work but it still does not solve the problem of having data in the actual galaxy instance without uploading data. I am still trying to get a handle on using the dynamic_options tag set I think you may answered on my biostar question regarding ...
written 21 months ago by bornea2720
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Users Having Access to Data On Different Server
... We are looking into using galaxy on a larger scale production server but one of the major limitations is that in order fro the user to run a tool on a dataset it has to have been uploaded to galaxy. We would like to have a way to have each user view data on shared drive so there is not massive uploa ...
galaxy written 22 months ago by bornea2720 • updated 22 months ago by danielfortin86100
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Comment: C: running out of space despite deleting everything
... Have you used the process detailed here https://wiki.galaxyproject.org/Admin/Config/Performance/Purge%20Histories%20and%20Datasets. If so you might want to make sure the reason in galaxy with something like tree size. ...
written 22 months ago by bornea2720
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Get Options from a File During Job Creation
... I want to get my tool to quickly read the dataset selected and get options for a param type="select" prior to submitting a job. I am attempting to use a <code file="get_info.py"/> that will return the options but no matter how I try to parse in the inputs variable name in  <param name="bait ...
galaxy written 22 months ago by bornea2720 • updated 21 months ago by bensellak.taoufik0
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Sending Files over Pulsar with a Local Tool
... I am trying to figure out how to get static files stored on my Linux machine to go with all of the tool information and database files to my Windows box via Pulsar. Right now I do this by creating a select parameter with options tag with from_ file pointing to file but the parameter is unused. Is th ...
galaxy written 22 months ago by bornea2720 • updated 22 months ago by jmchilton1.0k
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Comment: C: Publishing a Tool. How automated should the installation be?
... I have attempted to use the R package already provided in galaxy but it would not work on my operating system (CentOs 7). I eventually resolved to allow the user to use R package if it will work (it is included in my tool_dependencies file) but inform the user that it may require manual installation ...
written 22 months ago by bornea2720
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Publishing a Tool. How automated should the installation be?
... My lab is currently working towards generating a new tool that uses R and several R packages but sort of depends on having R and the ability to install bioconductor packages. I have a code that automatically does it some linux distributions but not all. Should the install process include installatio ...
galaxy written 2.1 years ago by bornea2720 • updated 2.1 years ago by Jennifer Hillman Jackson23k
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Comment: C: Pulsar Error on Windows
... So I went back even further to the commit from 2/14/15 specifically this (https://github.com/galaxyproject/pulsar/commit/53b81ebb00e8834b3a688f087a9c2ff0d9eea402) commit and it worked. Hopefully this helps troubleshooting and thank you for pointing me in the right direction. ...
written 2.7 years ago by bornea2720
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Comment: C: Pulsar Error on Windows
... Unfortunately that did not work I used the commit you recommend but when I went to run it I got the same error. I also have the results of the tester that is provided with pulsar which also gives this error:  Traceback (most recent call last):   File "C:\pulsar-master\pulsar\client\test\check.py", ...
written 2.7 years ago by bornea2720
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Pulsar Error on Windows
... I am attempting to run pulsar on a windows machine which I have successfully accomplished on other windows 7 machines but for some reason every time I try to run "paster serve server.ini" I get: Traceback (most recent call last):   File "C:\Python27\Scripts\paster-script.py", line 9, in <module& ...
galaxy written 2.7 years ago by bornea2720 • updated 2.7 years ago by jmchilton1.0k

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