User: k.mamoud

gravatar for k.mamoud
k.mamoud30
Reputation:
30
Status:
New User
Location:
Switzerland
Last seen:
1 month, 2 weeks ago
Joined:
2 years, 8 months ago
Email:
k*******@gmail.com

Posts by k.mamoud

<prev • 16 results • page 1 of 2 • next >
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Web Dav client
... Dear all, Is there any possibilty for galaxy to use a WebDAV client to connect to a storage database in order to access the files stored there. Best regards, Mohamed ...
webdev galaxy data written 6 weeks ago by k.mamoud30 • updated 6 weeks ago by Jennifer Hillman Jackson23k
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Galaxy update with git
... Dear all, I have a Galaxy which i was updating with mercurial, now I know that it will be only by git, so how i can do it by using the command line propose in the Galaxy update web page.   Thank you, ...
mercurial galaxy git update written 22 months ago by k.mamoud30 • updated 22 months ago by Hotz, Hans-Rudolf1.7k
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Irods - Galaxy
... Dear all,   In out institute we are working with Irods to mamage our data, I would like to know if we can link Galaxy with our internal irods management system. I did not find any information about that in the Galaxy wiki.     Best regards,   ...
irods galaxy written 2.3 years ago by k.mamoud30 • updated 2.3 years ago by Bjoern Gruening4.8k
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cleanup datasets script python
... Hello, I am trying to run the script cleanup_datasets.py, but I have this error :   (galaxy_env)[galaxy@localhost galaxy-dist]$ python scripts/cleanup_datasets/cleanup_datasets.py ../../config/galaxy.ini -d 5  -1 -r Traceback (most recent call last):   File "scripts/cleanup_datasets/cleanup_datas ...
dataset clean galaxy written 2.4 years ago by k.mamoud30 • updated 2.4 years ago by Dannon Baker3.6k
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Answer: A: GALAXY input/output directory
... Dear all, I am coming back on the input files subject. To upload heavy data to the Galaxy histories I am using the data libraries API. But it is limited because I can do it by creating a library for each user that is the user name (email). But when you are admin you can upload directly by using ...
written 2.6 years ago by k.mamoud30
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Link UCSC local genome browser with a local Galaxy instance
... Dear all, I am trying to link my local ucsc genome browser with my local Galaxy instance. I find the way to link it with ucsc_tablebrowser. But when for instance i am doing a mapping and I want to visualize it, it returns to the main, do you know what other files I have to change the link ?   T ...
local galaxy news ucsc written 2.6 years ago by k.mamoud30 • updated 2.6 years ago by Jennifer Hillman Jackson23k
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Answer: A: PRINSEQ toolshed ?
... Dear all, I tried to install prinSeq via the the testtoolshed of my Galaxy instance but I coul not find it, finally I tried to install it by myself. So I downloaded the tool from https://testtoolshed.g2.bx.psu.edu/ hg clone https://testtoolshed.g2.bx.psu.edu/repos/bgruening/prinseq. Then I change ...
written 2.7 years ago by k.mamoud30
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Comment: C: PRINSEQ toolshed ?
... Hello Jennifer, thanks for your message. So I tried to install it by clicking on Galaxy test tool shed button then I put prinseq on the saerch box but nothing No items ...   Thanks,   ...
written 2.7 years ago by k.mamoud30
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Answer: A: Galaxy Portal app available on Google Play
... Hello it is really nice, I like it. Is it possible  to link with a personal Galaxy server  instead of the main Galaxy ?   Thanks in advance,   Mohamed ...
written 2.7 years ago by k.mamoud30
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Comment: C: PRINSEQ toolshed ?
... Hello Jennifer, Thanks for your message. Unfortunately it does not work. So here some paths in the galaxy.ini : # Tool config files, defines what tools are available in Galaxy. # Tools can be locally developed or installed from Galaxy tool sheds. # (config/tool_conf.xml.sample will be used if l ...
written 2.7 years ago by k.mamoud30

Latest awards to k.mamoud

Popular Question 21 months ago, created a question with more than 1,000 views. For MUMmer dot plot error
Popular Question 21 months ago, created a question with more than 1,000 views. For GALAXY input/output directory

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