User: skeffington

gravatar for skeffington
Reputation:
0
Status:
New User
Location:
European Union
Last seen:
2 years, 8 months ago
Joined:
2 years, 10 months ago
Email:
s**********@mpimp-golm.mpg.de

Posts by skeffington

<prev • 6 results • page 1 of 1 • next >
0
votes
1
answer
2.0k
views
1
answers
Comment: C: Wig/BedGraph-to-bigWig fails with "hashMustFindVal: '1' not found Error running
... not yet, but I should give it a go - I'm much more comfortable in linux than I was two weeks ago - much thanks to all the professional bioinfomaticians on sites like this that give their time to answer my questions! ...
written 2.9 years ago by skeffington0
0
votes
1
answer
2.0k
views
1
answers
Comment: C: Wig/BedGraph-to-bigWig fails with "hashMustFindVal: '1' not found Error running
... Hi Hans-Rudolf, So you think the large number of "chromosomes" is causing trouble for the bedgraph-to-bigwig tool? I don't think it's critical that it's in bigWig format, so maybe I'll give up. This is the world of non-model organisms with rather imperfect genome assemblies.I'm really an experimen ...
written 2.9 years ago by skeffington0
0
votes
1
answer
2.0k
views
1
answers
Comment: C: Wig/BedGraph-to-bigWig fails with "hashMustFindVal: '1' not found Error running
... Hi Hans-Rudolf, Thanks for your comment. I admit it does look like that sort of problem, but I have only one genome file, which I have used for every step of the procedure, so there shouldn't be any chromosome name mismatches. The genome file has several hundred contigs that derive from two sources ...
written 2.9 years ago by skeffington0
1
vote
1
answer
2.0k
views
1
answer
Wig/BedGraph-to-bigWig fails with "hashMustFindVal: '1' not found Error running wigToBigWig."
... Hi, I have a very large, merged BAM file which I successfully converted to a bedgraph using the "Create a BedGraph of genome coverage" tool. I was then trying to convert this file to bigwig format (to aid viewing with IGV) using the Wig/BedGraph-to-bigWig tool with the default settings. However, I ...
bigwig bedgraph wig/bedgraph-to-bigwig galaxy written 2.9 years ago by skeffington0
0
votes
1
answer
921
views
1
answers
Comment: C: Extract Genomic DNA error with custom genome
... That worked! Many thanks! Alastair ...
written 2.9 years ago by skeffington0
2
votes
1
answer
921
views
1
answer
Extract Genomic DNA error with custom genome
... Hi, I'm new to Galaxy, and I and trying to use the "extract genomic dna" tool. I would like to fetch the sequences defined in a cuffmerge output file (GTF format) from a custom genome file in my history (an indexed fasta file, genome.fa.fai). This is the same genome file that was used in the transc ...
gtf custom genome galaxy extract genomic dna gff written 2.9 years ago by skeffington0 • updated 2.9 years ago by Jennifer Hillman Jackson23k

Latest awards to skeffington

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 80 users visited in the last hour