User: Oliver, Gavin

gravatar for Oliver, Gavin
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7 years, 2 months ago
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Posts by Oliver, Gavin

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Comment: C: Error Aligning Sequence
... Looks like a bowtie error. The first chunk memory size can be increased on the command line with --chunkmbs=128 The default is 64. I don't know if this is possible in Galaxy though. [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of Jennifer Jackson To: A Bierzynska Cc: galaxy-user@bx.p ...
written 7.2 years ago by Oliver, Gavin20
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Snp Annotation
... Hi, I am new to Galaxy and am wondering what tools are available for annotation of SNPs? I know that snpEff is implemented in Galaxy and this enables annotation such as location and predicted effect, however I am wondering if there are any automated means of annotating a polymorphism as known/ ...
snp snpeff written 7.4 years ago by Oliver, Gavin20 • updated 7.4 years ago by Jennifer Hillman Jackson25k

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