Moderator: Istvan Albert

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Istvan Albert260
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Location:
University Park
Last seen:
9 months, 1 week ago
Joined:
11 years, 8 months ago
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Posts by Istvan Albert

<prev • 26 results • page 1 of 3 • next >
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Forum: The Biostar Handbook is out. Perhaps the Galaxy Handbook should be next?
... Hello Everyone, This is both a note and invitation to people passionate about Galaxy to write a Handbook for it. The **Biostar Handbook** is self published out of markdown files, it runs its own, standalone, simple and straightforward publishing platform that manages and keeps tracks of users, acc ...
galaxy handbook forum written 9 months ago by Istvan Albert260 • updated 9 weeks ago by anavisharma345770
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Comment: C: No output from Cuffdiff
... The author of a post or moderators may close/delete a posts (using the moderate link) but only moderators can reopen them. It occasionally happens that a user accidentally deletes their own post but then they cannot reopen it nor will they be able to see the post. I usually reopen the post and ask ...
written 3.3 years ago by Istvan Albert260
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Answer: A: Getting Started with Galaxy Biostar
... A new feature has been added to Biostar Galaxy, all posts can now be answered via email. Just hit reply in your email client and the reply will be posted as a comment. (this is really a test for this feature) ...
written 3.4 years ago by Istvan Albert260
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Comment: C: Filter SAM or BAM
... MAPQ quality of 255 is useless information. That field shows the mapping quality as a probablitity. The 255 is there because that version of software (bowtie1 most likely) is unable to fill it in correctly therefore puts the largest valid value there. So forget about the MAPQ and move on to the ne ...
written 3.4 years ago by Istvan Albert260
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Comment: C: How do I obtain uniquely mappable reads from bowtie on galaxy?
... unmapped reads will be dropped, those can't be turned into BED records ...
written 3.4 years ago by Istvan Albert260
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Comment: C: Welcome to Galaxy Biostar
... Let me turn if off then for now, since there would be very few posts to choose from. Then we'll turn it on back later, where I'll add the selection feature as well. ...
written 3.4 years ago by Istvan Albert260
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Comment: C: Welcome to Galaxy Biostar
... I see, let me describe what is going on there. There is a so called "bump" feature that people  on Biostars have requested. It is to remind them of older posts and freshen the view during slower days. The bumping takes place every six hours. It has a 50% chance to choose either one random question ...
written 3.4 years ago by Istvan Albert260
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Comment: C: Welcome to Galaxy Biostar
... It is possible to have an auto-accept applied retroactively and probably the vast majority would be correct. The problem is really the remaining 10-15% where the answer may not be correct or a solution was not reached yet the algorithm would still add that mark. I think that would greatly diminish ...
written 3.4 years ago by Istvan Albert260
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Comment: C: Visualizing BowTie2 BAM File?
... take a screenshot upload into a site like http://www.imgur.com and paste the link into a post ...
written 3.4 years ago by Istvan Albert260
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Comment: C: Genetrack-Indexer/Peakpredictor
... Hello Everyone, I think in general you should make sure to cite the authors of the original publication in addition to Galaxy, the note in Galaxy should make this explicit. Small tidbits that may be useful. There is a command line version for genetrack with its source code at: https://github.co ...
written 5.9 years ago by Istvan Albert260

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