User: rlee03

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rlee0350
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United States
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2 years, 2 months ago
Joined:
2 years, 10 months ago
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r*****@gmail.com

Posts by rlee03

<prev • 27 results • page 1 of 3 • next >
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Comment: C: Installation of a Visualization in my local instance of galaxy
... this example also works on my local instance! Great! Thanks everyone. Same here, let me know when changes are made for this functionality. ...
written 2.1 years ago by rlee0350
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Comment: C: Installation of a Visualization in my local instance of galaxy
... Thank you very much for your guidance up until this point. 1) when I upload a sample Blast.xml output file as my test data , the Visualizer does NOT appear on the right side of the galaxy GUI (slide 1) . 1a) inside the crossbio_blast.xml ....."datatype">blast.BlastXml</test> , is blast ...
written 2.2 years ago by rlee0350
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Comment: C: Installation of a Visualization in my local instance of galaxy
... The visualization icon does show up for interval files, but the drop down option for crossbio Js doesn't exist. Only visualizations of scatterplot & trackster exist as options in history dropdown menu. ...
written 2.2 years ago by rlee0350
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Comment: C: Installation of a Visualization in my local instance of galaxy
... Hi Carl, Sorry to keep bugging you with a bunch of questions. Thanks. I went through a series of uploads w/ various blast upload datatypes and cannot view this icon in the history. Could it be possible that I must adjust the galaxy ini file? Below are my screen shots, I'm working out of docker image ...
written 2.2 years ago by rlee0350
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Comment: C: Installation of a Visualization in my local instance of galaxy
... these are excellent directions. Thank you. Also would you happen to know where on the galaxy GUI this shows up? e.g. how would I upload the blast xml output as the input for crossbio? Thank you. ...
written 2.2 years ago by rlee0350
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Comment: A: Installation of a Visualization in my local instance of galaxy
... Hi carl,  see googledrive https://drive.google.com/open?id=0B-J0sIwOpVwAb21ySi1SajhDbVU  . Thanks! -Roy ...
written 2.2 years ago by rlee0350
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Comment: C: Installation of a Visualization in my local instance of galaxy
... Hi, I'm trying to implement crossbio on my local instance of galaxy, by copying these files w/ their respective locations in my local galaxy instance. https://github.com/bgruening/galaxy_blast/tree/b324ba9efa9e9d579445bf4fd352d2b0c39990fd/visualizations/crossbio_blast 1) I placed them in the followi ...
written 2.2 years ago by rlee0350
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Installation of a Visualization in my local instance of galaxy
... Hi!  I am trying to load a crossbio visualization onto my local instance of galaxy.  Per the "The Visualizations Registry" wiki in Galaxy,   1) I configured the  galaxy.ini file   by uncommenting  "visualizations_plugins_directory = config/plugins/visualizations"  2) I copied and pasted the fold ...
xml galaxy local visualization written 2.3 years ago by rlee0350
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Comment: C: Blast Output Visualizers in Galaxy
... 1) I'm sorry, but may you please clarify your response. "You only see it on special datatypes, in this case I think it was blastxml." What is the "it" you are referring to? So...... 2) Cross Bio Receives Blast XML files as input. How can I load the Blast XML input file so Cross Bio reads it? 3) I fo ...
written 2.3 years ago by rlee0350
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Answer: A: Blast Output Visualizers in Galaxy
... I'm sorry, but may you please clarify your response. "You only see it on special datatypes, in this case I think it was blastxml." What is the "it" you are referring to? Cross Bio Receives Blast XML files as input. How can I load the Blast XML input file so Cross Bio reads it? Thanks.   ...
written 2.3 years ago by rlee0350

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