User: kjsiddle

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kjsiddle30
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France
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2 years, 2 months ago
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2 years, 2 months ago
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k*******@pasteur.fr

Posts by kjsiddle

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Comment: C: Stitch MAF blocks - can gaps in reference be kept?
... Thank you for your response. I have actually already tried this option and there was no difference (i.e. no gaps in hg18) when I used both "yes" and "no". Just as an example, one of the regions I am trying to extract is this one: chr12(+):9111571-9111685. When I use "stitch" I get the following: ...
written 2.2 years ago by kjsiddle30
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Stitch MAF blocks - can gaps in reference be kept?
... Dear all, I am using the galaxy tool "Stitch MAF blocks" to extract multiple alignments (using the 28-way multiZ) and concatenate them into a single sequence per species. I have noticed that the resulting hg18 sequence in the fasta file contains no gaps (even though there are gaps within the indivi ...
galaxy written 2.2 years ago by kjsiddle30 • updated 2.2 years ago by Jennifer Hillman Jackson22k

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