User: Enis Afgan

gravatar for Enis Afgan
Enis Afgan440
Reputation:
440
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Location:
United States
Last seen:
5 days, 16 hours ago
Joined:
6 years, 1 month ago
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Posts by Enis Afgan

<prev • 53 results • page 1 of 6 • next >
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Answer: A: 403 Forbidden Uploading Data from S3 in Galaxy
... It sounds like there are two concepts being mixed up a bit here. The *bucket_default* bit is all stuff related to CloudMan and is hence not relevant when just uploading data to Galaxy. To log into the CloudMan console, use username *ubuntu* and the password you supplied when launching the instance. ...
written 6 days ago by Enis Afgan440
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Answer: A: How to configure cloud launch app for aws?
... Here's an example for the values: ![enter image description here][1] The values come from the AWS docs, e.g., http://docs.aws.amazon.com/general/latest/gr/rande.html#ec2_region Since you're setting this up, you may consider using the new version of CloudLaunch that will soon become the default: htt ...
written 7 days ago by Enis Afgan440
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Answer: A: What settings should be changed in a deployed standard Galaxy instance with Post
... From your description, I'm guessing you're just using Amazon as the infrastructure but are installing Galaxy entirely by hand (vs. using CloudMan)? If so, there are detailed instructions on how to setup a production Galaxy server in the documentation, specifically: https://new.galaxyproject.org/admi ...
written 3 months ago by Enis Afgan440
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Answer: A: Cannot launch cloudman instance on AWS
... This is most likely caused by the the fact you seem to be supplying a value for the default bucket (i.e., genomespace_galaxy_dev). Unless that bucket has a copy of CloudMan application and a boot script (as described here https://wiki.galaxyproject.org/CloudMan/CustomizeGalaxyCloud#Using_custom_Clou ...
written 5 months ago by Enis Afgan440
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Answer: C: Galaxy: Error when Installing tools with Ansible playbook for the Galaxy Tools
... So did this get resolved on Github? https://github.com/galaxyproject/ansible-galaxy-tools/issues/38 ...
written 6 months ago by Enis Afgan440
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Comment: C: Sailfish on the Cloud Failure
... OK; and I'm seeing exactly the same behavior. I've created an issue here as I'm not sure if this is a configuration or tool issue: https://github.com/galaxyproject/tools-iuc/issues/995 ...
written 7 months ago by Enis Afgan440
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Comment: C: Sailfish on the Cloud Failure
... sailfish may not be installed by default. Did you try installing it via the ToolShed and then you got the error? Or did you try installing it by hand directly on the cloud server? ...
written 7 months ago by Enis Afgan440
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Comment: C: bowtie2 index file not found by tophat - galaxy cloudman instance error
... Hmm - I'm not able to reproduce this; jobs run fine on a freshly launched stock instance. It appears FASTQGroomer sets the datatype to "fastqsanger" but perhaps make sure that is the case (you can change the datatype by clicking on the dataset's pencil icon). If that doesn't fix it, you could email ...
written 9 months ago by Enis Afgan440
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Comment: C: start working with cloudman
... Yep. Let us know if you have questions about it. ...
written 9 months ago by Enis Afgan440
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Answer: A: start working with cloudman
... As Martin said in the comments, this is not natively supported but it's an experimental feature. You can take a look at this paper for details on how to set it up and see how it preforms: http://onlinelibrary.wiley.com/doi/10.1002/cpe.3536/abstract Granted, this has not seen any adoption until now s ...
written 9 months ago by Enis Afgan440

Latest awards to Enis Afgan

Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Cloudman rebooting/resizing not working
Scholar 10 months ago, created an answer that has been accepted. For A: Cloudman rebooting/resizing not working
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: How to deploy CloudMan in OpenStack?

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