User: Enis Afgan

gravatar for Enis Afgan
Enis Afgan410
Reputation:
410
Status:
Trusted
Location:
United States
Last seen:
1 day, 17 hours ago
Joined:
5 years, 10 months ago
Email:
a*****@gmail.com

Posts by Enis Afgan

<prev • 51 results • page 1 of 6 • next >
0
votes
1
answer
150
views
1
answers
Answer: A: What settings should be changed in a deployed standard Galaxy instance with Post
... From your description, I'm guessing you're just using Amazon as the infrastructure but are installing Galaxy entirely by hand (vs. using CloudMan)? If so, there are detailed instructions on how to setup a production Galaxy server in the documentation, specifically: https://new.galaxyproject.org/admi ...
written 3 days ago by Enis Afgan410
0
votes
2
answers
111
views
2
answers
Answer: A: Cannot launch cloudman instance on AWS
... This is most likely caused by the the fact you seem to be supplying a value for the default bucket (i.e., genomespace_galaxy_dev). Unless that bucket has a copy of CloudMan application and a boot script (as described here https://wiki.galaxyproject.org/CloudMan/CustomizeGalaxyCloud#Using_custom_Clou ...
written 11 weeks ago by Enis Afgan410
1
vote
2
answers
185
views
2
answers
Answer: C: Galaxy: Error when Installing tools with Ansible playbook for the Galaxy Tools
... So did this get resolved on Github? https://github.com/galaxyproject/ansible-galaxy-tools/issues/38 ...
written 3 months ago by Enis Afgan410
0
votes
0
answers
106
views
0
answers
Comment: C: Sailfish on the Cloud Failure
... OK; and I'm seeing exactly the same behavior. I've created an issue here as I'm not sure if this is a configuration or tool issue: https://github.com/galaxyproject/tools-iuc/issues/995 ...
written 4 months ago by Enis Afgan410
0
votes
0
answers
106
views
0
answers
Comment: C: Sailfish on the Cloud Failure
... sailfish may not be installed by default. Did you try installing it via the ToolShed and then you got the error? Or did you try installing it by hand directly on the cloud server? ...
written 4 months ago by Enis Afgan410
0
votes
0
answers
140
views
0
answers
Comment: C: bowtie2 index file not found by tophat - galaxy cloudman instance error
... Hmm - I'm not able to reproduce this; jobs run fine on a freshly launched stock instance. It appears FASTQGroomer sets the datatype to "fastqsanger" but perhaps make sure that is the case (you can change the datatype by clicking on the dataset's pencil icon). If that doesn't fix it, you could email ...
written 6 months ago by Enis Afgan410
0
votes
2
answers
143
views
2
answers
Comment: C: start working with cloudman
... Yep. Let us know if you have questions about it. ...
written 6 months ago by Enis Afgan410
0
votes
2
answers
143
views
2
answers
Answer: A: start working with cloudman
... As Martin said in the comments, this is not natively supported but it's an experimental feature. You can take a look at this paper for details on how to set it up and see how it preforms: http://onlinelibrary.wiley.com/doi/10.1002/cpe.3536/abstract Granted, this has not seen any adoption until now s ...
written 6 months ago by Enis Afgan410
0
votes
0
answers
155
views
0
answers
Comment: C: Configuring SWIFT object storage
... Glad to hear you've made progress. There's no need for a Swift client to be installed since only *boto* is being used. ...
written 7 months ago by Enis Afgan410
0
votes
0
answers
155
views
0
answers
Comment: C: Configuring SWIFT object storage
... Does the cloud you're using have EC2/S3 APIs enabled? Galaxy's implementation for using Swift object store relies on *boto* library, which is an AWS native library so everything goes via those API endpoints. Using the native OpenStack APIs is not available at the moment. With that, I believe it's u ...
written 7 months ago by Enis Afgan410

Latest awards to Enis Afgan

Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Cloudman rebooting/resizing not working
Scholar 7 months ago, created an answer that has been accepted. For A: Cloudman rebooting/resizing not working
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: How to deploy CloudMan in OpenStack?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 75 users visited in the last hour