User: mhayes20

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mhayes2030
Reputation:
30
Status:
New User
Location:
United States
Last seen:
4 months, 1 week ago
Joined:
2 years, 10 months ago
Email:
m*******@tnstate.edu

Posts by mhayes20

<prev • 12 results • page 1 of 2 • next >
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Extracting files from .dat archives
... Hi, I downloaded a Galaxy history to my local disk and it saves as a .dat file. The history contained several BAM files and I would like to access each file individually. How can I extract files from a .dat archive? Thank you. ...
bam galaxy .dat written 5 months ago by mhayes2030 • updated 5 months ago by Devon Ryan1.8k
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Comment: C: Delay in job processing for EC2 instance
... I did. I think I will just create another instance and I will see if I still have problems. ...
written 2.7 years ago by mhayes2030
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Comment: C: Delay in job processing for EC2 instance
... The SGE service status is "running". When I checked the log for SGE, I had the following messages:   03/20/2015 20:47:16| main|ip-172-31-30-120|I|read job database with 0 entries in 0 seconds 03/20/2015 20:47:16| main|ip-172-31-30-120|E|error opening file "/opt/sge/default/common/./sched_config ...
written 2.7 years ago by mhayes2030
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Comment: C: Delay in job processing for EC2 instance
... Also, I have submitted two jobs that are very small; they just echo a message to the screen. I submitted these jobs an hour ago and I am still waiting for them to run. This is a Cloudman instance, so I am very perplexed by this, especially since no other jobs are running and no other users are logg ...
written 2.7 years ago by mhayes2030
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Comment: C: Delay in job processing for EC2 instance
... Thank you Jen. No, it is not a spot instance, but I am indeed the administrator. I logged in as a super user and submitted a job on 3/15/15, but it is still waiting in the queue.  ...
written 2.7 years ago by mhayes2030
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Answer: A: Delay in job processing for EC2 instance
... edit for deletion ...
written 2.7 years ago by mhayes2030
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Delay in job processing for EC2 instance
... Hello, I submitted a few jobs using an EC2 instance of Galaxy. My jobs have been waiting in the queue indefinitely; one of my jobs had been waiting for 4 days before I deleted it. I am the only user of this instance. Am I correct in assuming that the jobs should execute immediately? Thank you. ...
ec2 jobs written 2.7 years ago by mhayes2030
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Comment: C: Accessing key pairs to Galaxy instances
... Ah, so it appears that Amazon will only let you download the key file once. I had apparently already done this, but misplaced the original file. When I deleted the key and started over, it worked. Thanks!   ...
written 2.8 years ago by mhayes2030
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Accessing key pairs to Galaxy instances
... Hello, I launched a new instance of Galaxy through Amazon EC2 per the following instructions: https://wiki.galaxyproject.org/CloudMan According to Step 2, it says that I can download the key pair from the resulting page. However, I do not see an option to download the key pair. Any help is apprec ...
keypair ec2 amazon key pair written 2.8 years ago by mhayes2030 • updated 2.8 years ago by Dannon Baker3.6k
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Comment: C: Logging into public Galaxy server through UNIX terminal
... Thank you. I think this will work well for our needs. ...
written 2.8 years ago by mhayes2030

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