User: roisinmcallister

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United Kingdom
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3 years, 6 months ago
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Posts by roisinmcallister

<prev • 6 results • page 1 of 1 • next >
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(Closed) fastqc on fastq.gz files in galaxy?
... What do I need to convert a fastq.gz file (from ENA) to so galaxy fastqc will accept it? thanks r ...
galaxy fastqsanger.gz ena-sra get-data written 10 days ago by roisinmcallister0 • updated 10 days ago by Jennifer Hillman Jackson25k
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galaxy history deleted and purged but still says 45% full?
... galaxy history deleted and purged but still says 45% full? how can I clear? roisin ...
quota active galaxy purge delete written 10 weeks ago by roisinmcallister0 • updated 10 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: galaxy says I'm using 100% of my quota- but I know I am using around 30%
... yes, i just had to permanently delete everything thank you rma ...
written 18 months ago by roisinmcallister0
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galaxy says I'm using 100% of my quota- but I know I am using around 30%
... Hi, I was using Galaxy a couple of weeks ago and I was then using around 30% of my quota. Today, I actually deleted some large bam files from my history (and purged them); but galaxy is telling me that I am using 100% of my quota?? I've tried logging out and in again; but that doesn't help. Please ...
quota written 18 months ago by roisinmcallister0 • updated 18 months ago by Martin Čech ♦♦ 4.8k
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Answer: A: error using variant recalibrator in galaxy
... Thanks Jennifer Sorry, yes I should have said that I am using hg19 as a Custom Reference (as per the Galaxy instructions in the link above). I have used that reference in all the prevoius steps (alignmnent in BWA, dup removal in Picard, realignment and BQSR and in SNP calling with UG......all of wh ...
written 3.5 years ago by roisinmcallister0
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error using variant recalibrator in galaxy
...     Tool name: Variant Recalibrator Tool version: 0.0.4 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/variant_recalibrator/gatk_variant_recalibrator/0.0.4 ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/variant_recalibrator I have been trying to implement the GATK best practice protoco ...
variant-recalibrator written 3.5 years ago by roisinmcallister0

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Popular Question 18 months ago, created a question with more than 1,000 views. For error using variant recalibrator in galaxy

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