User: binni

gravatar for binni
binni20
Reputation:
20
Status:
New User
Location:
Sweden
Last seen:
2 years, 10 months ago
Joined:
2 years, 10 months ago
Email:
b****@binnisb.com

Posts by binni

<prev • 4 results • page 1 of 1 • next >
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Using module system with Galaxy
... Hi. I have a local installation of Galaxy on our server. The server has a module system with loads of bioinformatics software and versions installed. Without galaxy we can load a module and execute the program so: $ module load cutadapt/1.5.0 $ cutadapt a.fastq etc... Can I somehow use these ava ...
galaxy module slurm written 2.9 years ago by binni20 • updated 2.9 years ago by Wolfgang Maier380
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Comment: C: Not seeing any tools in local galaxy setup
... Thanks a lot! I have then been struggling to get the deps installed instead of the package! Will inform how it goes. ...
written 2.9 years ago by binni20
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Comment: C: Not seeing any tools in local galaxy setup
... Might have. Not at the pc at the moment, will check tonight. How do I install a tool rather than deps? ...
written 2.9 years ago by binni20
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Not seeing any tools in local galaxy setup
... Hi. I have cloned the galaxy-dist repo to a cluster I have access to. On that cluster we have login nodes that users share when logging in, and then we have nodes we reserve through slurm. Our system also uses a module system to load different bioinformatics software / different versions. My goal ...
galaxy written 2.9 years ago by binni20 • updated 2.9 years ago by Dannon Baker3.6k

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