User: ginlucks

gravatar for ginlucks
ginlucks10
Reputation:
10
Status:
New User
Location:
European Union
Last seen:
2 years, 8 months ago
Joined:
2 years, 10 months ago
Email:
g*******@gmail.com

Posts by ginlucks

<prev • 9 results • page 1 of 1 • next >
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Error VCF- VCFintersect
... Hello, I'm try to select shared variant between patients using VCF-VCFintersect but appear this error message: unable to find FASTA index entry for 'M' if I use hg_g1k as reference genome or unable to find FASTA index entry for '1' If I sue hg19 as reference genome thanks in advance for any h ...
intersect vcf M fasta written 2.8 years ago by ginlucks10 • updated 2.8 years ago by Jennifer Hillman Jackson23k
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Answer: A: MAF in VCF file, where is it?
... I have try to use some tools as Variant annotator or MAF exploit but it shows me these errors Fatal error: Exit code 1 () Error: Input file does not seem to have a proper header line. Adding an artificial header..Traceback (most recent call last): File "/galaxy/main/shed_tools/toolshed.g2.bx.psu.e ...
written 2.8 years ago by ginlucks10
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Answer: A: MAF in VCF file, where is it?
... Hello, thank you for answer. I used "NGS: VCF Manipulation -> VCFfixup" but problem persists. Any other suggest?   thank you in advance. ...
written 2.8 years ago by ginlucks10
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MAF in VCF file, where is it?
... Hi all I'm using galaxy and I need to know allele frequency (MAF, minor frequency allele) for each SNP or variant. I click on "view data" but it show as frequency's value (AF=)  only 1,00 or 0,50 I wonder where I'm going wrong..   ...
maf vcf af written 2.8 years ago by ginlucks10
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Local instance: This job is waiting to run
... Hi all I'm loading a fastq file (90Mb....so not a big one) on my local instance of galaxy, but it stuck on "This job is waiting to run"................I used local instance to avoid this problem, so what is the matter? ...
this job is waiting to run local instance written 2.8 years ago by ginlucks10 • updated 2.8 years ago by Jennifer Hillman Jackson23k
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Answer: A: Problem Setting Up Admin In Galaxy Local Instance!
... Sorry if i respond too late...but I'm sure i had write a post with a solution  in this thread..  however i need to reinstall galaxy on my new computer and at the moment i have the same problem! i cant remeber how i solved it last time ....   Yes i cant log in as administrator and i need to be admi ...
written 2.8 years ago by ginlucks10
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Answer: A: can't load Fastq file
... it works!   thank you ...
written 2.9 years ago by ginlucks10
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can't load Fastq file
... Hi all,   I would use BWA tool but when I try to add  the fastq file by click on the menu below ''FASTQ file:'' it appears a small grey box with no voices or options. I also try to upload the file clicking on get data--> Upload file from your computer and than try again but still nothing appen ...
file visualization bwa upload written 2.9 years ago by ginlucks10 • updated 24 months ago by moustafa.zakaria10
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Answer: A: Problem Setting Up Admin In Galaxy Local Instance!
... Hello, I have the same problem here, I'm using linux and i changed ''galaxy.ini.sample'' as followed: # Administrative users - set this to a comma-separated list of valid Galaxy # users (email addresses). These users will have access to the Admin section # of the server, and will have access to ...
written 2.9 years ago by ginlucks10

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