User: Guy Reeves

gravatar for Guy Reeves
Guy Reeves970
Reputation:
970
Status:
Trusted
Location:
Germany
Last seen:
46 minutes ago
Joined:
2 years, 6 months ago
Email:
r*****@evolbio.mpg.de

Posts by Guy Reeves

<prev • 231 results • page 1 of 24 • next >
0
votes
4
answers
99
views
4
answers
Comment: C: VCF combine only showing chromosome 1 in the output
... Combining two VCFs I did this https://www.dropbox.com/s/cm0z305ezc3yxyo/Screen%20Shot%202017-07-13%20at%2007.58.01.png?dl=0 and got https://www.dropbox.com/s/idr09tsb5ieezx1/Screen%20Shot%202017-07-13%20at%2007.58.24.png?dl=0 !There us a difference between combine and merge ! ...
written 7 days ago by Guy Reeves970
0
votes
4
answers
99
views
4
answers
Answer: A: VCF combine only showing chromosome 1 in the output
... If you post the shared link to the history here that may also help me help you. ...
written 7 days ago by Guy Reeves970
0
votes
4
answers
99
views
4
answers
Comment: C: VCF combine only showing chromosome 1 in the output
... I just tried this tool and I get only one output file and one log file. ...
written 8 days ago by Guy Reeves970
0
votes
4
answers
99
views
4
answers
Comment: C: VCF combine only showing chromosome 1 in the output
... what is the difference between combine versus merge VCF? ...
written 8 days ago by Guy Reeves970
1
vote
4
answers
99
views
4
answers
Answer: A: VCF combine only showing chromosome 1 in the output
... Hi Siri Can I sugest you try another tool. I am assuming that you are using usegalaxy.org. So I suggest you try "Combine Variants (Galaxy Version 0.0.4)" and see if you get the same result. If you are using your own galaxy instance there are a number of other tools you could try Tell us what ha ...
written 9 days ago by Guy Reeves970
3
votes
1
answer
141
views
1
answers
Answer: A: Correct way of merging samples for father, mother, child trio variant calling
... I am not too sure that there is a single correct way to do this. Basically I think the plan you have is fine. Personally I do not do any preprocessing steps before mapping (the soft clipping capacity of the mappers remove the need). After the mapping merge the BAMs (makeing sure you have any readg ...
written 14 days ago by Guy Reeves970
1
vote
1
answer
35
views
1
answers
Answer: A: DBSNP, Variant Caller
... use SnpEff Variant effect and annotation. There appears to be two versions installed on usegalaxy.org. Only one ((Galaxy Version 4.0.0)) appears to have the human database you want installed. ...
written 14 days ago by Guy Reeves970
0
votes
1
answer
72
views
1
answers
Comment: C: Plotting Density Of Snps On Chromosomes
... I think I used 2kb check output file in the Dropbox. If this is also empty, then it looks like the tool is not installed correctly . Ask your admin to check its dependencies. ...
written 17 days ago by Guy Reeves970
0
votes
1
answer
72
views
1
answers
Comment: C: Plotting Density Of Snps On Chromosomes
... I just ran a small .vcf on our instance. I have put the .vcf and the SNP density output on this drop box. Took< 20 seconds https://www.dropbox.com/sh/sqj6okcrirq52bg/AACSOxfeMBxTy_sl5iiysEvNa?dl=0 Tell me if you get the same result. This will tell you if it is the tool or your .vcf ...
written 17 days ago by Guy Reeves970
0
votes
1
answer
72
views
1
answers
Answer: A: Plotting Density Of Snps On Chromosomes
... mistake ...
written 17 days ago by Guy Reeves970

Latest awards to Guy Reeves

Guru 9 days ago, received more than 100 upvotes.
Teacher 14 days ago, created an answer with at least 3 up-votes. For A: How to successfully export large numbers of files outside of galaxy- as history
Scholar 3 months ago, created an answer that has been accepted. For A: How to successfully export large numbers of files outside of galaxy- as history
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How to successfully export large numbers of files outside of galaxy- as history
Scholar 4 months ago, created an answer that has been accepted. For A: increasing the number of concurent jobs that can be run
Scholar 10 months ago, created an answer that has been accepted. For A: increasing the number of concurent jobs that can be run
Voter 20 months ago, voted more than 100 times.
Scholar 20 months ago, created an answer that has been accepted. For A: Without 'Available inputs are:' it is not possible to rename datasets in workflo
Scholar 20 months ago, created an answer that has been accepted. For A: Attaching annotations to Sequences
Centurion 21 months ago, created 100 posts.
Scholar 2.0 years ago, created an answer that has been accepted. For A: Attaching annotations to Sequences
Student 2.2 years ago, asked a question with at least 3 up-votes. For What is the ROD file -Need help with "Realigner Target Creator" tool
Rising Star 2.2 years ago, created 50 posts within first three months of joining.
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: variable inputs workflow
Supporter 2.3 years ago, voted at least 25 times.
Student 2.5 years ago, asked a question with at least 3 up-votes. For What is the ROD file -Need help with "Realigner Target Creator" tool

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 66 users visited in the last hour