User: jingshuowang

gravatar for jingshuowang
jingshuowang10
Reputation:
10
Status:
New User
Location:
Germany
Last seen:
8 months, 2 weeks ago
Joined:
3 years, 5 months ago
Email:
j***********@gmail.com

Posts by jingshuowang

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Cufflinks duplicate GFF ID error
... I think this is an old but common problem that many people encountered when running the cufflinks with the ENsemble annotation references. I have modified the annotation file download from Ensembl (GRCh37.V75). When I selected the option -G (use reference annotation), the cufflinks could successful ...
cufflinks rna-seq written 3.4 years ago by jingshuowang10 • updated 3.4 years ago by Jennifer Hillman Jackson25k
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5 follow
1
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Building Bowtie index, failed
... I encountered a problem when trying to mapping RNA-seq reads to the genome. Fatal error: Tool execution failed [2015-01-02 07:08:06] Beginning TopHat run (v2.0.9) ----------------------------------------------- [2015-01-02 07:08:06] Checking for Bowtie     Bowtie version:  2.1.0.0 [2015-01-02 07:0 ...
rna-seq alignment tophat gff written 3.4 years ago by jingshuowang10 • updated 3.4 years ago by Bjoern Gruening5.0k

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Popular Question 3.2 years ago, created a question with more than 1,000 views. For Building Bowtie index, failed

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