User: Paul-Michael Agapow

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120
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New User
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Last seen:
6 years, 3 months ago
Joined:
7 years, 3 months ago
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p******************@hpa.org.uk

Posts by Paul-Michael Agapow

<prev • 12 results • page 1 of 2 • next >
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Toolshed Initial Upload Errors Out
... As per the title, I'm trying to setup a toolshed for our local use. After creating a repo, I try to upload the initial file only to get: TypeError: array item must be char Which seems to happen repeatedly, i.e. it's not a passing error. While I'm here, a perhaps obvious question: where or how ...
galaxy written 6.3 years ago by Paul-Michael Agapow120 • updated 6.3 years ago by Greg Von Kuster810
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Finding Galaxy Version
... A perhaps obvious question: how do I work out what version of Galaxy an instance is? This has come up a few times because of apparent bugs and different behaviour across various development and production instances. Now if you're installed straight from the repo, you can use "hg log" for the rep ...
galaxy written 6.6 years ago by Paul-Michael Agapow120 • updated 6.6 years ago by Nate Coraor3.2k
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Tools Appearing Without Inputs In Workflow Editor
... A peculiar bug, presented for your input: A colleague has built a few tools and is trying to incorporate them into a workflow. However: 1. When he creates an new empty workflow, edits it and adds the tools, they appear without inputs (i.e. the icons/boxes on the diagram have no input "sock ...
galaxy written 6.7 years ago by Paul-Michael Agapow120
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Getting (Or Setting) Physical File Name
... So one of my colleagues has a script he wants to turn into a Galaxy tool. The twist is that script: 1. Looks for files with a fixed name (e.g. "params.txt") 2. Accepts other file names as commandline arguments, but the actual names of those files has arguments embedded in it (e.g. ...
galaxy written 6.8 years ago by Paul-Michael Agapow120 • updated 6.8 years ago by Peter Cock1.4k
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Galaxy Installation Contractors In Uk
... Perhaps a better question for the dev list but: It looks as if we are going to be getting a small lump of money to upgrade our Galaxy instance for wider use within our division. This will course mean setting up a new server and installing Galaxy, but there are some other things we'd like: adapting ...
galaxy written 6.9 years ago by Paul-Michael Agapow120
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Uploading Bulk Data To User Accounts
... So, I'm trying to setup a smooth pathway for our users to import their NGS data into Galaxy. I'd hoped for a solution that would require zero interaction with an administrator, but things seem more awkward than they should be: 1. We can automagically push produced NGS data into a user import direct ...
galaxy written 6.9 years ago by Paul-Michael Agapow120 • updated 6.9 years ago by Greg Von Kuster810
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Answer: A: New Galaxy User
... Gaurav all The Galaxy wiki is the best place to go for these things, as Louise-Amelie said. You should be able to ignore most things in the config files initially as they will "just work". You can ignore most of the directory structure as well, except perhaps the "tools" directory. all Mostly, t ...
written 7.1 years ago by Paul-Michael Agapow120
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Comment: C: Handling Large Files In Galaxy
... than the appreciated. While (from others experience) Galaxy _should_ be able to upload files that large, we've had some problems with our local installation too. Investigation didn't reveal any cause, so we put it down to the quality of our network. You might what to look at the webserver or proxy ...
written 7.1 years ago by Paul-Michael Agapow120
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Recall: Upload File Size And User Authorization
... Paul-Michael Agapow would like to recall the message, "[galaxy-user] Upload file size and user authorization". ********************************************************************** **** The information contained in the EMail and any attachments is confidential and intended solely and for the attent ...
galaxy written 7.3 years ago by Paul-Michael Agapow120
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Recall: Upload File Size And User Authorization
... Paul-Michael Agapow would like to recall the message, "[galaxy-user] Upload file size and user authorization". ********************************************************************** **** The information contained in the EMail and any attachments is confidential and intended solely and for the attent ...
galaxy written 7.3 years ago by Paul-Michael Agapow120 • updated 7.3 years ago by Jennifer Hillman Jackson25k

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