User: Guru Ananda

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Guru Ananda60
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Last seen:
5 years, 10 months ago
Joined:
6 years, 9 months ago
Email:
g***@psu.edu

Posts by Guru Ananda

<prev • 6 results • page 1 of 1 • next >
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Answer: A: New Genome Load Request
... Dear Mark, Sorry for the delay in response. We're wondering whether or not to include pseudomolecules (along with contigs and scaffolds) as genomic sequence for cacao genome. Can you kindly clarify this? Thanks, Guru. -- Graduate student, Bioinformatics and Genomics Makova lab/Galaxy team Pe ...
written 5.9 years ago by Guru Ananda60
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Re: [Galaxy-Bugs] Gi Errors In The Megablast Table Of Results ?
... Dear Sandrine, Thanks for pointing out this issue. The BLAST databases we have on Galaxy are from last year, while those on NCBI website are the latest (Jan 2012). As pointed out on NCBI website ( http://www.ncbi.nlm.nih.gov/Sitemap/sequenceIDs.html), it appears that each time any change is made to ...
galaxy written 5.9 years ago by Guru Ananda60 • updated 5.8 years ago by Peter Cock1.4k
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Comment: C: Text Manipulation: Filter Out Duplicates (Uniq) From An Plain Text File ?
... Hi Peter and Roman, The "Count" tool under "Statistics" section provides uniq-like functionality. If you run this tool by selecting all columns under "Count occurrences of values in column(s)" field, your output will contain one line per record, with the 1st column containing the number of occurren ...
written 6.6 years ago by Guru Ananda60
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Comment: C: Nucleotide Analysis - Gc Percentage
... Thanks for pointing this out, Brad. Both geecee and infoseq are in fact available on Galaxy under EMBOSS section. Guru. -- Graduate student, Bioinformatics and Genomics Makova lab/Galaxy team 505 Wartik lab University Park PA 16802 guru@psu.edu ...
written 6.7 years ago by Guru Ananda60
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Answer: A: Nucleotide Analysis - Gc Percentage
... Hi Peter, There isn't a built-in Galaxy tool to compute GC%, yet. You could perhaps use UCSC's hgGcPercent binary, which lets you compute GC% for BED intervals. You can find the same here: http://genome.ucsc.edu/FAQ/FAQdownloads#download27 Thanks, Guru. -- Graduate student, Bioinformatics and ...
written 6.7 years ago by Guru Ananda60
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Comment: C: Cpg Masking Changing Alignment Length?
... Hi Mike, Would you mind sharing your history with me (guru@psu.edu) so that I can take a look at what's going on? You can do this by selecting "Options -> Share or Publish -> Share with a user" and entering my email address. Thanks, Guru. On Thu, Mar 10, 2011 at 9:15 AM, Michael E. Steiper ...
written 6.8 years ago by Guru Ananda60

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