User: bixdw

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bixdw0
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Posts by bixdw

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Answer: A: where can I get Info files for CummeRbund from Galaxy cuffdiff?
... Hello,   Thank you for the reply. I am running the cuffdiff on the main gagalxy server. I do not have access to the local Galaxy instance. Indeed when I include the Read Group Data there adittional; group_tracking files. Unfortunately CummeRbund also needs the .info files to use full range of funt ...
written 3.2 years ago by bixdw0
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where can I get Info files for CummeRbund from Galaxy cuffdiff?
... Hello, I am working with CummeRbund package for Cuffdiff output. It is a great package that makes the analysis a lot easier. However Galaxy cuffdiff output does not contain any info files which are required for replicate analysis of CummeRbund. Is there a way to retrive these files? Thank you for a ...
cuffdiff output galaxy cummerbund written 3.2 years ago by bixdw0 • updated 3.1 years ago by rossi0
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CummeRbund and Galaxy read_group_tracking files
... Dear All, I really hope it is a trivial question that can be easily resolved. I would like ot look at the individual replicates in cummeRbund. I ran the cuffdiff on the Galaxy main server and got 15 files. of these I know how to rename them per the manual but there are 4 which contain the replicate ...
rna-seq cummerbund written 3.2 years ago by bixdw0 • updated 3.2 years ago by Jennifer Hillman Jackson25k
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Cufflinks 0.0.7 and CummeRbound
... Hi All,   Has anyone had any experience with running R package CummeRbound with cufflinks verison 0.0.7 installed on the Galaxy Main? Does it work? Or is there some backwards compatibility issues? The package recommeds cufflinks 2.0 or higher.  Just an FYI I don't have a Linux machnie nor do I hav ...
cufflinks cummerbound written 3.2 years ago by bixdw0 • updated 3.2 years ago by Jennifer Hillman Jackson25k

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