User: tuto345

gravatar for tuto345
tuto34520
Reputation:
20
Status:
New User
Location:
France
Last seen:
3 months, 3 weeks ago
Joined:
3 years ago
Email:
t******@hotmail.com

Posts by tuto345

<prev • 23 results • page 1 of 3 • next >
0
votes
3
answers
523
views
3
answers
Answer: A: Installing new tools
... Hello, Is there any news on this subject? I have the same problem, installed bwa, the dependencies are all installed, but bwa is not found by galaxy. In the bwa-mem.xml file the macros are imported and the requirements are expanded but somehow the $GALAXY_HOME/dependency_dir/bwa/0.7.12/iuc/package ...
written 18 months ago by tuto34520
0
votes
5
answers
961
views
5
answers
Comment: C: DESeq2 file missing
... Sorry, should have included more info:  Latest stable galaxy release newly installed on Centos 7. In the INSTALLATION.log, for the 3 libs, I have * checking LAPACK_LIBS: divide-and-conquer complex SVD available via system LAPACK g++ -I/home/galaxy/galaxy/dependency_dir/R/3.2.1/iuc/package_r_3_2_1 ...
written 2.1 years ago by tuto34520
0
votes
5
answers
961
views
5
answers
Answer: A: DESeq2 file missing
... Hi all, Any news on this? I have the same local install problem on two separate machines. According to the logs the R libs RcppArmadillo, DESeq2 and KernSmooth fail to build/install. Any solution for this issue? Thanks Cristian ...
written 2.1 years ago by tuto34520
0
votes
2
answers
1.6k
views
2
answers
Comment: C: GALAXY_SLOTS not working
... Hi Manekineko, If you used the exact same lines, it should work. It did for me at least. Check that the names in the tool definition, especially destination, matches a destination id and that the runner is matches exactly the name of a plugin definition. You should restart galaxy after making the c ...
written 2.4 years ago by tuto34520
0
votes
1
answer
516
views
1
answers
Comment: C: Help with paths
... Done! I was accessing the mobile version and didn't have the tick mark. Cheers, Cristian ...
written 2.5 years ago by tuto34520
0
votes
1
answer
516
views
1
answers
Comment: C: Help with paths
... Sure! And how exactly do I do that? ...
written 2.5 years ago by tuto34520
0
votes
1
answer
516
views
1
answers
Comment: A: Help with paths
... Hi Hanz-Rudolf This worked perfectly! I never thought of reading the run.sh file and the scripts launched from within. A very interesting read... Thanks again, Cristian ...
written 2.5 years ago by tuto34520
4
votes
1
answer
516
views
1
answer
Help with paths
... Hi all, I have problems understanding how environment variables are used/modified in galaxy. I have some tools like, for instance, bedtools installed in /usr/local/bin which is in the path on a cluster and I would like this binary to be used. Some tools that launch bedtools after a pipe (i.e. ... ...
environment galaxy written 2.5 years ago by tuto34520
1
vote
3
answers
1.1k
views
3
answers
Answer: A: Galaxy and CentOS 7
... Hi Hena, I have a production installation on CentOS 7. The few "problems" I encountered were related to selinux (audit2allow is your friend here) and not knowing that CentOS comes with a running firewall (firewall-cmd) by default. For the rest, no problems at all. Good luck with your installation! ...
written 2.7 years ago by tuto34520
0
votes
2
answers
671
views
2
answers
Comment: C: Error when running Bismark with pair end/Full parameter list
... Hi Bjoern, The diff below is against the toolshed version. Your github version is already corrected. Cheers and thanks a lot for your work! Cristian diff -r 91f07ff056ca bismark_bowtie2_wrapper.xml --- a/bismark_bowtie2_wrapper.xml    Mon Apr 14 16:43:14 2014 -0400 +++ b/bismark_bowtie2_wrapper. ...
written 2.8 years ago by tuto34520

Latest awards to tuto345

Popular Question 6 months ago, created a question with more than 1,000 views. For Error with Torque/drmaa
Popular Question 18 months ago, created a question with more than 1,000 views. For GALAXY_SLOTS not working

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 103 users visited in the last hour