User: Karen Tang

gravatar for Karen Tang
Karen Tang40
Reputation:
40
Status:
New User
Location:
Last seen:
6 years, 9 months ago
Joined:
6 years, 10 months ago
Email:
t*****@msi.umn.edu

Posts by Karen Tang

<prev • 4 results • page 1 of 1 • next >
0
votes
1
answer
4.0k
views
1
answers
Answer: A: Bed-To-Gff: Option For Gff3 Format
... Hi Galaxy developers, Any plans on adding a GTF-to-GFF3 format conversion? This converter is at the Rätsch lab's instance of Galaxy (http://galaxy.tuebingen.mpg.de/). Could it be made more widely available? Karen :) Dept of Plant Biology University of Minnesota ...
written 6.8 years ago by Karen Tang40
0
votes
1
answer
4.0k
views
1
answer
Bed-To-Gff: Option For Gff3 Format
... Hi Galaxy developers, Any plans on adding a gff3 format option to BED-to-GFF? I found a BED-to-GFF3 converter at the Rätsch lab's instance of Galaxy (http://galaxy.tuebingen.mpg.de/). Any plans on making this converter more widely available? Karen :) Dept of Plant Biology University of Minnesota ...
gff written 6.8 years ago by Karen Tang40
0
votes
4
answers
7.3k
views
4
answers
Comment: C: Extract Sequences From [Gtf File] + [Genome Fasta File]
... I was thinking of something different. Here is a example of a three-exon transcript, in gtf format: contig00035 Cufflinks transcript 3 22 1000 + . gene_id "CUFF.23955"; transcript_id "CUFF.23955.1"; contig00035 Cufflinks exon 3 10 1000 ...
written 6.9 years ago by Karen Tang40
1
vote
4
answers
7.3k
views
4
answers
Extract Sequences From [Gtf File] + [Genome Fasta File]
... Hi Galaxy people, I have transcripts predicted by Cufflinks that are in a gtf file. How can I extract the sequences corresponding to those transcripts, using Galaxy? [Cufflinks transcript predictions in gtf file] + [Genome sequence in FASTA file] ---> [FASTA file of transcript sequence ...
cufflinks rna-seq written 6.9 years ago by Karen Tang40 • updated 6.6 years ago by Edge Edge10

Latest awards to Karen Tang

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 101 users visited in the last hour