User: yu.1.wang

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yu.1.wang20
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Location:
Germany
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2 years, 6 months ago
Joined:
3 years, 1 month ago
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y********@gmail.com

Posts by yu.1.wang

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Galaxy can't find installed samtools when doing BWA mapping
... GALAXY TOOL ERROR REPORT ------------------------ This error report was sent from the Galaxy instance hosted on the server "http://localhost:8080/galaxy/" ----------------------------------------------------------------------------- This is in reference to dataset id 161 from history id 51 -------- ...
written 2.6 years ago by yu.1.wang20
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Galaxy can't find installed samtools when doing BWA mapping
... Hello, I am trying a tutorial on NGS mapping. I installed BWA and samtools from tool_shed, but I got the following error: Traceback (most recent call last): File "/local/galaxy-dist/lib/galaxy/jobs/runners/local.py", line 129, in queue_job job_wrapper.finish( stdout, stderr, exit_code ) Fi ...
samtools tool_shed bwa written 2.6 years ago by yu.1.wang20
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Failure to download data from EBI-SRA to a local Galaxy instance
... Hi, I find that the galaxy downloading link from EBI-SRA doesn't work on my local galaxy instance. When I try it directly on the EBI website, it sent me to the main Galaxy instance at PSU. Do I miss some configurations here? When I click the link of the EBI-SRA files for galaxy in my local galaxy in ...
ebi sra download written 2.6 years ago by yu.1.wang20 • updated 26 days ago by mohancm890
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Config Galaxy for DRMAA
... Dear all, I am wondering if anyone can point a documentation on how to configure Galaxy with DRMAA. We are using slurm, so I have installed slurm-drmaa. Now I need to let Galaxy to know where the slurm-drmaa is and what the local slurm configuration is. I checked https://wiki.galaxyproject.org/Adm ...
drmaa cluster slurm written 2.6 years ago by yu.1.wang20 • updated 2.6 years ago by Enis Afgan590
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CloudMan on OpenNebula?
... Hi, I don't find any documentation on how to deploy CloudMan on OpenNebula. Is this just a silly question? Or CloudMan is just for deploying galaxy on EC2? Thanks, Regards, Yu ...
cloudman opennebula written 2.8 years ago by yu.1.wang20 • updated 2.8 years ago by Enis Afgan590
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galaxy main tool shed "join" installation error
... Hi, I am trying to install "join" de21bdbb8d28, from Galaxy main tool shed, but it failed with the following error: Will skip URL https://pypi.python.org/simple/numpy/1.7.1 when looking for download links for numpy==1.7.1 (from -r /home/wang/galaxy-dist/tool_deps/bx-python/0.7.1/devteam/package_bx_ ...
pacakge tool shed installation written 3.0 years ago by yu.1.wang20 • updated 2.9 years ago by jmchilton1.0k

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