User: abogutz

gravatar for abogutz
abogutz30
Reputation:
30
Status:
New User
Location:
Canada
Last seen:
3 years ago
Joined:
3 years, 11 months ago
Email:
a***********@ubc.ca

Posts by abogutz

<prev • 6 results • page 1 of 1 • next >
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Comment: C: mpileup metadata problem in workflow
... Hi Jen, I haven't seen any activity on the Trello ticket - is this metadata problem being worked on? ...
written 3.0 years ago by abogutz30
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Comment: C: mpileup metadata problem in workflow
... I'd like to clarify this problem - it's definitely only a metadata problem, as I can cancel the step after the mpileup, resolve the metadata, then run the subsequent step successfully. Unfortunately this is an early step in a very long workflow, so restarting each step by hand would be quite unwield ...
written 3.1 years ago by abogutz30
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mpileup metadata problem in workflow
... I've got a workflow that uses the old samtools mpileup (v0.0.1) on the main galaxy instance. The next step has been stalling due to metadata not being autodetected in the subsequent dataset. It seems to be happening regardless of the input .bam file. Is this a problem with galaxy? The workflow has w ...
samtools mpileup metadata written 3.1 years ago by abogutz30 • updated 3.1 years ago by Jennifer Hillman Jackson25k
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Comment: C: bcftools view no longer present?
... Yes, the workflow is on Galaxy Main. ...
written 3.9 years ago by abogutz30
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Comment: C: bcftools view no longer present?
... Thanks Bjoern. To be clear, does that mean that this tool will no longer be available on the main Galaxy instance? ...
written 3.9 years ago by abogutz30
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bcftools view no longer present?
... I've got some old workflows that included the tool bcftools_view, and now they show an error with this message: Unrecognized Tool: toolshed.g2.bx.psu.edu/repos/gregory-minevich/bcftools_view/bcftools_view/0.0.1 The tool id 'toolshed.g2.bx.psu.edu/repos/gregory-minevich/bcftools_vie ...
samtools galaxy snp written 3.9 years ago by abogutz30 • updated 3.2 years ago by Martin Čech ♦♦ 4.8k

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