User: Sonali Amonkar

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Posts by Sonali Amonkar

<prev • 14 results • page 1 of 2 • next >
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Browser Support For Galaxy
... Hi, (It was good to hear about that there is another release upcoming very soon. Looking forward to it.) I came across an issue in IE8 of the Workflow design progress bar not closing for a long time. When I tried it in Mozilla Firefox it worked fine. I also found that the history pane in Firefox ...
galaxy written 7.7 years ago by Sonali Amonkar150
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Answer: A: "Interval" Attribute For Input?
... Hi, What I am trying is, A) to write an exec_after_process for tool1(Scatterer tool). This tool1 gives multiple outputs(in the form of files names generated by Galaxy). scatterer_postprocess.py def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr): print "C ...
written 7.7 years ago by Sonali Amonkar150
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Error With Setuptools Version In Galaxy Installation On Cluster
... Hi, First of all I would like to appreciate the clean and neat documentation written for the Galaxy setup for Cluster. I am attempting to install Galaxy on Penguin cluster with Torque PBS manager. While following the steps I came across an error as below: ========================================= ...
galaxy written 7.7 years ago by Sonali Amonkar150
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Comment: C: Run Tools/Workflow From Command Line
... Hi Jen, I went through the link. And it WAS a feature that I planned to explore next(Cluster support & installation). However, coming back to my original question, the only API mention I found there was the DRMAA. After reading a bit about it I realized that it is an API built to communicate be ...
written 7.7 years ago by Sonali Amonkar150
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Comment: C: Run Tools/Workflow From Command Line
... Hi Jen, I got the answer from James regarding the API question(Thank you James!, your answer was exactly what I wanted to know), however I did not get his reply on mail so pasting the inline content for reference. Can you also let me know what the release plan for the HTTP API functionality is? If ...
written 7.8 years ago by Sonali Amonkar150
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"Interval" Attribute For Input?
... Hi, Currently I am building a workflow which splits a file, say File 1 into chunks of files say File1.0, File1.1, File1.2. I used the interval attribute to have multiple outputs and got the chunks created successfully. However, now I want to connect another tool to this, which Reads multiple inpu ...
written 7.8 years ago by Sonali Amonkar150
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Fw: Run Tools/Workflow From Command Line
... Hi Jen, I agree what you mentioned on Tools. Does Galaxy have any provision for executing Workflows from command line too? Also about the API, I went through the Central version of readme link given by Roman. At initial glance I was unable to figure out what the scripts are for(am basically not fam ...
gmod written 7.8 years ago by Sonali Amonkar150 • updated 7.8 years ago by James Taylor470
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Comment: C: Can I Create Sub Workflows In Galaxy?
... Thank you for your time. I got what I was looking for here. Regards, Sonali Amonkar ________________________________________ To: Sonali Amonkar Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Can I create sub workflows in Galaxy? Hello Sonali, Please see below for our replies per ques ...
written 7.8 years ago by Sonali Amonkar150
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Run Tools/Workflow From Command Line
... Hi, 1. Does Galaxy provide command line execution of Workflows / tools? 2. Does Galaxy provide API of its own, which can be imported as a library in another program and used for executing certain workflows? Thanks for your time. Regards, Sonali Amonkar DISCLAIMER ========== This e- ...
galaxy written 7.8 years ago by Sonali Amonkar150 • updated 7.8 years ago by Jennifer Hillman Jackson25k
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Galaxy Does Not Startup On Machine With No Internet Access
... Hi, I'm trying to install and run galaxy-dist-8729d2e29b02 on a Linux RHEL 5.5 box. This machine has no direct access to the Internet. I followed the steps listed on the page https://bitbucket.org/galaxy/galaxy- central/wiki/Config/Eggs to download the eggs offline and placed them in the correct l ...
galaxy written 7.8 years ago by Sonali Amonkar150

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