User: Sonali Amonkar
Sonali Amonkar • 150
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- Last seen:
- 7 years, 8 months ago
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Posts by Sonali Amonkar
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... Hi,
(It was good to hear about that there is another release upcoming
very soon. Looking forward to it.)
I came across an issue in IE8 of the Workflow design progress bar not
closing for a long time. When I tried it in Mozilla Firefox it worked
fine. I also found that the history pane in Firefox ...
written 7.7 years ago by
Sonali Amonkar • 150
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... Hi,
What I am trying is,
A) to write an exec_after_process for tool1(Scatterer tool). This
tool1 gives multiple outputs(in the form of files names generated by
Galaxy).
scatterer_postprocess.py
def exec_after_process(app, inp_data, out_data, param_dict, tool,
stdout, stderr):
print "C ...
written 7.7 years ago by
Sonali Amonkar • 150
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... Hi,
First of all I would like to appreciate the clean and neat
documentation written for the Galaxy setup for Cluster.
I am attempting to install Galaxy on Penguin cluster with Torque PBS
manager.
While following the steps I came across an error as below:
========================================= ...
written 7.7 years ago by
Sonali Amonkar • 150
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... Hi Jen,
I went through the link. And it WAS a feature that I planned to
explore next(Cluster support & installation).
However, coming back to my original question, the only API mention I
found there was the DRMAA. After reading a bit about it I realized
that it is an API built to communicate be ...
written 7.7 years ago by
Sonali Amonkar • 150
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... Hi Jen,
I got the answer from James regarding the API question(Thank you
James!, your answer was exactly what I wanted to know), however I did
not get his reply on mail so pasting the inline content for reference.
Can you also let me know what the release plan for the HTTP API
functionality is? If ...
written 7.8 years ago by
Sonali Amonkar • 150
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... Hi,
Currently I am building a workflow which splits a file, say File 1
into chunks of files say File1.0, File1.1, File1.2. I used the
interval attribute to have multiple outputs and got the chunks created
successfully.
However, now I want to connect another tool to this, which Reads
multiple inpu ...
written 7.8 years ago by
Sonali Amonkar • 150
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... Hi Jen,
I agree what you mentioned on Tools. Does Galaxy have any provision
for executing Workflows from command line too?
Also about the API, I went through the Central version of readme link
given by Roman.
At initial glance I was unable to figure out what the scripts are
for(am basically not fam ...
written 7.8 years ago by
Sonali Amonkar • 150
• updated
7.8 years ago by
James Taylor ♦ 470
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... Thank you for your time. I got what I was looking for here.
Regards,
Sonali Amonkar
________________________________________
To: Sonali Amonkar
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Can I create sub workflows in Galaxy?
Hello Sonali,
Please see below for our replies per ques ...
written 7.8 years ago by
Sonali Amonkar • 150
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... Hi,
1. Does Galaxy provide command line execution of Workflows /
tools?
2. Does Galaxy provide API of its own, which can be imported as
a library in another program and used for executing certain workflows?
Thanks for your time.
Regards,
Sonali Amonkar
DISCLAIMER
==========
This e- ...
written 7.8 years ago by
Sonali Amonkar • 150
• updated
7.8 years ago by
Jennifer Hillman Jackson ♦ 25k
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... Hi,
I'm trying to install and run galaxy-dist-8729d2e29b02 on a Linux RHEL
5.5 box. This machine has no direct access to the Internet. I followed
the steps listed on the page https://bitbucket.org/galaxy/galaxy-
central/wiki/Config/Eggs to download the eggs offline and placed them
in the correct l ...
written 7.8 years ago by
Sonali Amonkar • 150
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