User: Victor Ruotti

gravatar for Victor Ruotti
Reputation:
90
Status:
New User
Location:
Last seen:
6 years, 1 month ago
Joined:
7 years, 11 months ago
Email:
r*****@wisc.edu

Posts by Victor Ruotti

<prev • 8 results • page 1 of 1 • next >
0
votes
1
answer
1.1k
views
1
answers
Comment: C: Rsem On Galaxy
... Hi Alicia, At the moment you have to install the wrapper manually. That is, the current version of the RSEM won't automatically install the rsem binaries for you. We are working on updating the tool from the tool shed. The readme file within the tarball provides instructions on what version of RSEM ...
written 6.1 years ago by Victor Ruotti90
0
votes
1
answer
732
views
1
answers
Comment: C: Re: Wrapper Question Prefix For Output Files.
... Thank you Shaun. That worked really good! One final question. What is the best way to generate output files dynamically by galaxy. That is if the user sets a parameter, say create bam file. Then the output file gets generated. If the same parameter is false or no, then galaxy does not generate this ...
written 6.7 years ago by Victor Ruotti90
0
votes
1
answer
732
views
1
answer
Re: Wrapper Question Prefix For Output Files.
... Hi Peter,Thanks for the quick feedback.  Sorry if I wasn't clear. Yes, I asking on how to set the labels for a file so instead of  we can have a variable that comes from the interface set by the user so it can be like this? Say the user set the name from a text box to be "S" We can have S saved as ...
written 6.7 years ago by Victor Ruotti90 • updated 6.7 years ago by SHAUN WEBB70
0
votes
3
answers
4.0k
views
3
answers
Answer: A: Pre-Processing Of Illumina Rna-Seq Paired End Data
... Hi, I hope someone can help me on how to implement this into a wrapper. We would like to add an option so the user can set a sample name which then be used for the prefix of the output files names. For example, Is it possible to provide a sample name that can be used to prefix the output files? For ...
written 6.7 years ago by Victor Ruotti90
0
votes
1
answer
1.1k
views
1
answer
Upgrade Script
... Hi, I'm trying to use the upgrade script given that the current schema is now version 90. I get the following error. Can anyone point me out, maybe there is something to do before upgrading? thanks in advance. Victor Traceback (most recent call last): File "/opt/galaxy/galaxy-dist-original/li ...
galaxy written 6.7 years ago by Victor Ruotti90 • updated 6.7 years ago by Greg Von Kuster810
0
votes
1
answer
973
views
1
answers
Comment: C: Galaxy Architecture Documentation
... Hi Dave, That was me! I'm currently talking with the condor folks here in Madison WI. It would be great to get galaxy going with Condor since condor nows forms part of red hat. Besides the existing available docs that you listed below who do you think would be best as a contact for questions regard ...
written 7.2 years ago by Victor Ruotti90
1
vote
1
answer
726
views
1
answer
Order Of Input Files When Creating A Workflow.
... Hi, Just wanted to report this to see if there any way to keep the order of the input files when creating a workflow. When I create a workflow starting with 4 input files. I named then 1,2,3,4 respective in that order from top to bottom. However when try to run the workflow I get a random order of t ...
written 7.9 years ago by Victor Ruotti90 • updated 7.8 years ago by Dannon Baker3.7k
0
votes
0
answers
607
views
0
answers
Order Of Input Files When Creating A Workflow.
... Hi, Just wanted to report this to see if there any way to keep the order of the input files when creating a workflow. When I create a workflow starting with 4 input files. I named then 1,2,3,4 respective in that order from top to bottom. However when try to run the workflow I get a random order of t ...
written 7.9 years ago by Victor Ruotti90

Latest awards to Victor Ruotti

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 109 users visited in the last hour