User: clarkd

gravatar for clarkd
clarkd30
Reputation:
30
Status:
New User
Location:
Canada
Last seen:
6 months, 3 weeks ago
Joined:
3 years, 1 month ago
Email:
c*****@unb.ca

Posts by clarkd

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Cummerbund visualization of expression plot
... No, I didn't! I seemed to be doing all the right things but I ran out of time. ...
written 6 months ago by clarkd30
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Cummerbund visualization of expression plot
... I am following the NGS101-16 video on Cuffdiff/Cummerbund to learn how to use Cummerbund. For expression plot, Cummerbund is unable to detect Gene ID and registers a value of "null". If I go ahead and execute, it reports the error "Parameter gene_id requires a value, but has no legal values define ...
rna-seq written 8 months ago by clarkd30 • updated 6 months ago by roxy.zhang0
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Answer: C: making galaxyIndices volume smaller in cloud by deleting genomes
... I figured it out!  The "Getting started..." documentation on biocloudlinux.org filled in the conceptual gap I had about the relationship between volumes and file systems, and how to set up file systems on a newly added volume.  Basic stuff that is very helpful for newcomers.  -Denise   ...
written 3.1 years ago by clarkd30
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making galaxyIndices volume smaller in cloud by deleting genomes
... I wish to remove most of the mnt/galaxyIndices/genomes files so I can have a smaller volume that contains those files and reduce AWS costs. I am new to this system. I have set up a Galaxy Cloudman account and used the tools on the web interface, and I can ssh the server using Ubuntu. So far, so good ...
galaxy written 3.1 years ago by clarkd30

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