User: ravi.alla

gravatar for ravi.alla
ravi.alla10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
3 years ago
Joined:
3 years, 1 month ago
Email:
r********@me.com

Posts by ravi.alla

<prev • 8 results • page 1 of 1 • next >
1
vote
2
answers
666
views
2
answers
Galaxy Cloud cluster ran out of storage
... Hi, I used galaxy provided share string to launch a cloudman cluster for a workshop. This shared galaxy instance comes with only 20GB of storage for the galaxy volume. We quickly ran out of storage half way through the workshop. This brought the workshop to a grinding halt (embarrassing I know). I ...
cloudman galaxy written 3.1 years ago by ravi.alla10 • updated 3.1 years ago by Dannon Baker3.6k
0
votes
1
answer
725
views
1
answers
Comment: C: Galaxy cloud cluster share-string for ChIP-Seq workshop
... Hopefully by Wednesday morning, if possible. ...
written 3.1 years ago by ravi.alla10
1
vote
1
answer
725
views
1
answer
Galaxy cloud cluster share-string for ChIP-Seq workshop
... Hi Galaxy Community, In the teaching section, I see a lot of excellent workshop and training materials. I am trying to organize a ChIP-Seq workshop and I was wondering if anyone has a cloudman share-string for a previous ChIP-Seq workshop. I notice that not a lot of the posted workshops have this i ...
chip-seq training cloudman workshop teach written 3.1 years ago by ravi.alla10 • updated 3.1 years ago by Jennifer Hillman Jackson23k
0
votes
2
answers
730
views
2
answers
Answer: A: How to restart a previous Cloudman instance
... Dannon, Thank you for the answer. I totally missed the dropdown in cloud launcher where it says instances in your account. I forgot to click on that dropdown and pick an already existing galaxy. Instead I kept it as new cluster and used the same name as before. This did ask me to reinitialize the c ...
written 3.2 years ago by ravi.alla10
0
votes
2
answers
730
views
2
answers
How to restart a previous Cloudman instance
... Hi, I am trying to start a galaxy instance in the cloud using AWS. I managed to follow instructions from https://wiki.galaxyproject.org/CloudMan and get an instance of galaxy going. I've uploaded some data and ran some analysis. I now want to terminate my cluster and cloud instance and log back in ...
cloudman written 3.2 years ago by ravi.alla10
0
votes
1
answer
5.2k
views
1
answers
Comment: C: bowtie2 output only mapped reads --no-unal option
... Thanks a lot Dannon. That is great to know. Makes my life much easier.  ...
written 3.2 years ago by ravi.alla10
0
votes
1
answer
5.2k
views
1
answers
Comment: C: bowtie2 output only mapped reads --no-unal option
... That is what I thought. Thanks for the clarification. Seems like a tedious work around, to use samtools to convert back to SAM and then filter (and maybe convert back to BAM). Is there a way to include a step to automatically delete intermediate files as part of a workflow? This would be invaluable ...
written 3.2 years ago by ravi.alla10
0
votes
1
answer
5.2k
views
1
answer
bowtie2 output only mapped reads --no-unal option
... Hi, I've been trying to run the galaxy bowtie2 tool and couldn't find an option to report only aligned reads. I believe bowtie2 reports all reads (both mapped and unmapped), but I thought using the flag to write unaligned reads to separate files, I would be able to get only aligned reads in my bam ...
bowtie written 3.2 years ago by ravi.alla10 • updated 3.2 years ago by Jennifer Hillman Jackson23k

Latest awards to ravi.alla

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 115 users visited in the last hour