User: rr14049

gravatar for rr14049
rr140490
Reputation:
0
Status:
New User
Location:
United Kingdom
Last seen:
2 months, 1 week ago
Joined:
2 years, 9 months ago
Email:
r******@bristol.ac.uk

Posts by rr14049

<prev • 7 results • page 1 of 1 • next >
0
votes
1
answer
89
views
1
answer
Question from student
... Hi all, Does anyone know if it's possible to see the total number of raw reads, the number of reads mapped and the number of genes from a BAM file of mRNA-Seq data? Many thanks Best Regards ...
bam rna-seq written 9 weeks ago by rr140490 • updated 9 weeks ago by Jennifer Hillman Jackson22k
0
votes
1
answer
133
views
1
answers
Comment: C: Limitations of DAVID pathways
... Thank you so much for your help! I used the KEGG database in DAVID for my project, is this one of the more frequently updated public databases? ...
written 5 months ago by rr140490
2
votes
1
answer
133
views
1
answer
Limitations of DAVID pathways
... Hi all, Sorry for posting what is probably a dumb question but I'm a masters student writing up my thesis and just needed some help. I understand DAVID is an over-representation analysis (ORA) based tool and understand the limitations associated with that but are there any specific limitations of ...
rna-seq written 5 months ago by rr140490 • updated 5 months ago by Devon Ryan1.6k
0
votes
1
answer
207
views
1
answer
Conversion of file format
... Hi there, I'm using galaxy.org and trying to convert two of my datasets from fastqsanger to fasta in order to run them through HISAT. When I try to do this I get the following error message: This dataset is currently being used as input or output. You cannot change datatype until the jobs have com ...
datasets usegalaxy.org metadata troubleshooting written 9 months ago by rr140490 • updated 9 months ago by Jennifer Hillman Jackson22k
0
votes
1
answer
272
views
1
answer
Problem with HISAT
... Hi, Im trying to run a custom workflow for RNA-seq data structured as follows: 1. Inputs: reference genome (GRCm38), forward and reverse (paired-end reads) 2. these feed into HISAT and the outputs of this into Cuffdiff along with GRCm38.85 gtf file. Unfortunately I keep getting the following err ...
cuffdiff hisat rna-seq written 9 months ago by rr140490 • updated 9 months ago by Jennifer Hillman Jackson22k
0
votes
1
answer
381
views
1
answer
Jobs stuck in limbo
... Hi, I am trying to execute a concatenation of two sets of paired-end reads and although it tells me the job is running it has not reached completion in over 72 hours - none of the files are especially large and the usage of my allocated data quotient is at 94%. Does anyone know what might be holdin ...
software error written 23 months ago by rr140490 • updated 23 months ago by Jennifer Hillman Jackson22k
0
votes
1
answer
1.1k
views
1
answer
'Paused Jobs' do not resume even after clicking 'Resume Paused Jobs'
... Hi there, do you happen to know why I am experiencing the following problem: 'Paused Jobs' do not resume even after clicking 'Resume Paused Jobs' and if so how may I resolve it to proceed with concatenation of my data sets? Many thanks Best Wishes        ...
software error written 2.8 years ago by rr140490 • updated 2.8 years ago by Jennifer Hillman Jackson22k

Latest awards to rr14049

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 61 users visited in the last hour