User: yewenduo

gravatar for yewenduo
yewenduo60
Reputation:
60
Status:
New User
Location:
United States
Last seen:
2 years, 4 months ago
Joined:
3 years, 7 months ago
Email:
y*******@gmail.com

Posts by yewenduo

<prev • 9 results • page 1 of 1 • next >
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Answer: A: No space left on device
... I have having the same problem!!!!!! ...
written 2.4 years ago by yewenduo60
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Answer: A: Unable to upload files
... I have having the same problem!!!!! ...
written 2.4 years ago by yewenduo60
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Comment: C: Give a list of genes and return Transcription starting sites as a bed file
... Hi, Jen: Thank you very much for your instruction! ...
written 3.3 years ago by yewenduo60
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Give a list of genes and return Transcription starting sites as a bed file
... Dear there: I have a questions that may seems naive to most of you: does anyone know if there is any program where I could use a list of genes as input and the return will be a list of TSS(as Bed)? The purpose I want to do is is that I want to plot the fold change of the gene expression I obtained ...
galaxy bioinformatics written 3.3 years ago by yewenduo60 • updated 3.3 years ago by Jennifer Hillman Jackson25k
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How to determine genome wide Co-occupancy between two transcription factors? by Galaxy main
... Hello: I am currently using Galaxy to analyze several sets of ChIP-Seq datas, including those published and in house generated from my own sample. When closely looking at two sets of bigWig file of TF binding data in UCSC genome browser, I surprisingly discovered that two of the transcription fact ...
chip-seq written 3.6 years ago by yewenduo60 • updated 3.6 years ago by fubar1.1k
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Comment: C: How to convert ion torrent Reads into Wiggle by galaxy?
... thank you! I am trying according your instructions in galaxy main. ...
written 3.6 years ago by yewenduo60
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Comment: C: How to convert ion torrent Reads into Wiggle by galaxy?
... Hi, Jen: If I were to ignore those Chr MT/NT, could you give me a suggestion how to do that in galaxy? if it was a smaller file I could just delete those lines by notepad++ by regular expression, but this file exceeded my computer capacity since it is too big. Can I do any regular expression maneuv ...
written 3.6 years ago by yewenduo60
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Comment: C: How to convert ion torrent Reads into Wiggle by galaxy?
... thank you very much!!!! ...
written 3.6 years ago by yewenduo60
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How to convert ion torrent Reads into Wiggle by galaxy?
... Hello: I just obtained a set of BAM file that is obtained by Ion Torrent(our collaborator helped with the mapping already). I used to use galaxy to process illumina reads, MACS in galaxy main instance will convert my SAM/BAM file into wiggle simultaneously while doing peak calling. Now I found th ...
chip-seq written 3.6 years ago by yewenduo60 • updated 3.6 years ago by Jennifer Hillman Jackson25k

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