User: Enis Afgan

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Enis Afgan680
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5 years, 2 months ago
Joined:
7 years, 12 months ago
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e*****@emory.edu

Posts by Enis Afgan

<prev • 68 results • page 1 of 7 • next >
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Comment: C: Connecting To New Galaxy Cloudman By Ftp
... FTP issues are fixed now so things will be functional out of the box without any of these workarounds. ...
written 5.2 years ago by Enis Afgan680
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Answer: A: Why Sge Needed For Galaxy ?
... Hi Zeeshan, In order to gain from the scalability of the cloud, SGE does need to run. However, CloudMan sets all that up and manages it going forward. Enis ...
written 5.8 years ago by Enis Afgan680
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Answer: A: Generating Excel Files..
... Hi Nuphar, I believe yu should be using a tool that is color-space aware and not converting the data - Galaxy Main has 'Bowtie for SOLID' available, which should understand your data as is. BTW, for these types of questions, you should send the email to galaxy-user mailing list (http://lists.bx.psu ...
written 5.9 years ago by Enis Afgan680
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New Galaxy Cloudman Release
... *We just released an update to CloudMan.* CloudMan offers an easy way to get a personal and completely functional instance of Galaxy in the cloud in just a few minutes, without any manual configuration. *This update brings a large number of updates and new features, the most prominent ones being:* ...
galaxy written 6.0 years ago by Enis Afgan680
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Answer: A: Can'T Seem To Stop Or Restart The Galaxy In Server
... With a certain version of Python there's been an issue stopping Galaxy using ctrl+C. You can use 'sh run.sh --daemon' to have the process run in the background and then 'sh run.sh --stop-damemon' to stop it. Hope this helps, Enis On Thu, Oct 18, 2012 at 4:12 PM, Sachit Adhikari < ...
written 6.1 years ago by Enis Afgan680
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Answer: A: Galaxytools Volume Not Given Enough Time To Attach
... Hi Joel, This has been addressed in one of the more recent commits ( https://bitbucket.org/galaxy/cloudman/src/7bf68fba5d8b/cm/services/dat a/volume.py#cl-237) but the updated version of CloudMan hasn't been released since then so it's not generally available. At this point, the fastest fix would b ...
written 6.1 years ago by Enis Afgan680
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Answer: A: Galaxy Upload Tool
... Hi Anatoliy, If you're going to keep that cluster alive continuously, just set it up as per the page whose link you provided and you should be ok. If you plan on having multiple users have their own cloud clusters with Galaxy, you'll probably want to do what I suggested in my previous email. Good l ...
written 6.1 years ago by Enis Afgan680
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Comment: C: Galaxy Cloudman - Nodes Can'T Make Their Own Qsub Calls?
... Added: worker nodes are now submit hosts as well: https://bitbucket.org/galaxy/cloudman/changeset/b4c66783b42fb559b35b68 9363b34826d00ced34 This will be generally available with the next release of CloudMan is made (however, there is no immediate plans for doing so as quite a bit of other details n ...
written 6.2 years ago by Enis Afgan680
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Comment: C: Galaxy + Sge
... Hi Lilach, It seems you ran into a bug that was introduced in the most recent CloudMan update. It's been fixed now. If you still have your instance up, the way to get around the issue is to simply strip off '/cloud' part of the URL and you'll get to Galaxy. Any new instances will work fine. Thanks ...
written 6.4 years ago by Enis Afgan680
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Updates To Cloudman
... *We just released an update to CloudMan.* CloudMan offers an easy way to get a personal and completely functional instance of Galaxy in the cloud in just a few minutes, without any manual configuration. *This update brings a large number of updates and new features, the most prominent ones being:* ...
galaxy written 6.5 years ago by Enis Afgan680

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