User: Philipp Rentzsch

Reputation:
0
Status:
New User
Location:
Germany
Last seen:
2 years, 11 months ago
Joined:
3 years, 3 months ago
Email:
r**************@gmail.com

Master Student at University of Heidelberg, Germany

Currently at Robert-Koch Institute, Berlin

Posts by Philipp Rentzsch

<prev • 6 results • page 1 of 1 • next >
0
votes
1
answer
817
views
1
answers
Comment: C: Biopython as repo dependency
... Ah okay, that explains it. I was testing on a private tool-shed without Biopython installed so that's probably the issue here. ...
written 3.2 years ago by Philipp Rentzsch0
0
votes
1
answer
817
views
1
answers
Comment: C: Biopython as repo dependency
... I also tried it with a tool_dependency as in this case and then got the error message: Unable to locate repository with name package_biopython_1_64 and owner biopython. The tool_dependencies.xml file contains an invalid tag. ...
written 3.2 years ago by Philipp Rentzsch0
3
votes
1
answer
817
views
1
answer
Biopython as repo dependency
... I am currently writing a tool in python that uses biopython for accessing Entrez. For this I tried to  add Biopython as a dependency according to their Manual. Unfortunately, when I add the file repository_depencies.xml: <?xml version="1.0"?> <repositories description="Requires Biopython ...
dependency biopython written 3.2 years ago by Philipp Rentzsch0 • updated 3.2 years ago by Bjoern Gruening4.8k
0
votes
2
answers
769
views
2
answers
Comment: C: Adding tests for unformated HTML output
... Yes, I have seen that. Unfortunatly the output for the new version is a single line, so "lines=diff='100' " does not work anymore. I thought about inserting a newline character between each '><' pair but did not want to change the output to much. ...
written 3.3 years ago by Philipp Rentzsch0
0
votes
2
answers
769
views
2
answers
Comment: C: Adding tests for unformated HTML output
... Hi Björn, This is actually pretty much what I was doing (based on the iuc package that should be very similar to your package and including some changes from tmcgowan from the main testtoolshed). Thanks, Philipp ...
written 3.3 years ago by Philipp Rentzsch0
0
votes
2
answers
769
views
2
answers
Adding tests for unformated HTML output
... Hi, I am currently adapting version 0.11.2 of FastQC as a Galaxy tool, as we want to include it in our workflow. As currently only an older version of the tool is available on the Galaxy Toolshed we thought of making it public. Unfortunately writing (output file comparison) tests for the new versio ...
test fastqc html written 3.3 years ago by Philipp Rentzsch0 • updated 3.3 years ago by fubar1.1k

Latest awards to Philipp Rentzsch

Autobiographer 3.3 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 120 users visited in the last hour